Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g01142 | ATGGACGACAGCCGTGGCCGTGGAAAGGATTACATGGAGGATTCCGCCGCAGCTGGAGGCGGGAAAGAGATCATCCGTTACCGGGGAGTACGACGACGGCCGTGGGGTAAATTCGCGGCGGAGATACGCGACTCTAGAAGGCAAGGAGTGCGTATTTGGTTGGGGACGTTCAACACCGCGGAGGAAGCCGCACGAGCTTACGATCGAGCAGCTTACAACATGAGGGGTCATTTGGCGATTTTGAACTTCCCGAGTGAATACCCGCCGAGAAGCTCGGGAGGCGGAGGCGGATTTTGTTGTTCGTCTTCTTCAAGGACAATGGGGCAAGATGAAGTGATTGAATTTGAGTATTTGGATGATAAAATGGATTACTCTGGATTCTTCTCGCCGGCGTCCGATTTCTCATCGGAATCCTCGTTTGATTCGCCGGAATCTTCGTTTATCAATTTGGATCATGATTTTCTTCCTTTTAATGAGAATGATTCCGAGGAAATGCTTCTCTATGAGCTGATCTCGGAGGGGAGGAATGATTCGTCCGAGAAGGGAAATGGGGCGGTGCGTGTTAAGGAGGAGGAGGTGGATTCCGTCGGCGAAGAGAGCCCAAAGAAGGAGAGATCTTACAGGGGAGTTCGCCGGCGTCCATGGGGGAAATTCGCCGCCGAAATTAGAGATTCCACCAGACGTGGCATAAGGGTATGGTTGGGAACATTCGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTTCGATGAGAGGAGCCACGGCGATTCTCAATTTCCCCGTCGACAGAGTTAGGGAATCTCTTAAGGAAATGAACTGCGGCGGCGATGGTTATGGGCTCGCCGAGGACGGCGGGTCGCCGGTGATTGCTTTGAAAAGAAAACACTCAGTGAGAAGAAATGGCATAAGCAAAAAGAAGAAAGAGAGAGATGTAAGGATCCAAAACATGGTGGTTTTGGAGGATTTAGGAACAGAGTATTTGGAAGAGCTTCTGGGGTCGTCTCAAAGTGGCAGCCCTTGTTCTTGCTAA | 1041 | 51.49 | MDDSRGRGKDYMEDSAAAGGGKEIIRYRGVRRRPWGKFAAEIRDSRRQGVRIWLGTFNTAEEAARAYDRAAYNMRGHLAILNFPSEYPPRSSGGGGGFCCSSSSRTMGQDEVIEFEYLDDKMDYSGFFSPASDFSSESSFDSPESSFINLDHDFLPFNENDSEEMLLYELISEGRNDSSEKGNGAVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRRGIRVWLGTFDSAEAAALAYDQAAFSMRGATAILNFPVDRVRESLKEMNCGGDGYGLAEDGGSPVIALKRKHSVRRNGISKKKKERDVRIQNMVVLEDLGTEYLEELLGSSQSGSPCSC | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8477035 | 8484277 | - | Carg06215-RA | Car06g01142 | 150878 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g01142 | 346 | Pfam | AP2 domain | 26 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
| Car06g01142 | 346 | Pfam | AP2 domain | 207 | 256 | IPR001471 | GO:0003700|GO:0006355 | |
| Car06g01142 | 346 | MobiDBLite | consensus disorder prediction | 175 | 205 | - | - | |
| Car06g01142 | 346 | ProSiteProfiles | AP2/ERF domain profile. | 206 | 264 | IPR001471 | GO:0003700|GO:0006355 | |
| Car06g01142 | 346 | ProSiteProfiles | AP2/ERF domain profile. | 26 | 84 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g01142 | Car17g00147 | CCT | |
| Car06g01142 | Car08g00962 | CCT | |
| Car06g01142 | Car08g00962 | ECH | |
| Car06g01142 | Car17g00147 | ECH | |
| Car06g01142 | Car14g01624 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g01142 | Car-Chr6:8477035 | Car08g00270 | Car-Chr8:1688509 | 1.12E-20 | dispersed | |
| Car14g01624 | Car-Chr14:13046883 | Car06g01142 | Car-Chr6:8477035 | 1.16E-21 | wgd | |
| Car17g00147 | Car-Chr17:921956 | Car06g01142 | Car-Chr6:8477035 | 3.16E-102 | wgd | |
| Car19g00066 | Car-Chr19:572150 | Car06g01142 | Car-Chr6:8477035 | 2.42E-21 | wgd | |
| Car02g01500 | Car-Chr2:9715850 | Car06g01142 | Car-Chr6:8477035 | 2.90E-21 | wgd | |
| Car06g01142 | Car-Chr6:8477035 | Car08g00961 | Car-Chr8:6422238 | 1.32E-20 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3735 | PF00847 | AP2 | 1.90E-14 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g01142 | K14516 | - | csv:101210326 | 325.865 |