Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01145 ATGGTGGCCGTCGACAAAGTGAGCCTCACGCCCGTCTCCAAGCTTGACGATGCCTTCGACAGAGCATCCGAACTGAAAGCTTTCGACGAAACTAAGGCCGGCGTCAAAGGCTTAGTCGACGCCGGGGTTGTCGAGATCCCAAGAATATTCTACCGCCCAACCAAAATTGACGATTCCAGTTCCGTCGAGACCCATCTCGGCGTTCCGGTGGTGGATCTCGAAGACGTCGACAAAGATCCCTTCAAACGCAGAGAGATTGTGGATAAAATCAGGGAAGCTTCAGAGACGTGGGGCTTTTTTCAAGCTGTAAACCATGGAGTTCCGGCGAGGCTTCAAGAGGAGGTCATCAATGGGGTGCGTCGATTTTACGAGCTAGACAGTGAAGTGAAGAAACAATATTATACAAGAGAGACCACCGCGCCGTTTGTTTACAATTGTAATTTCGATCTGTTCAGCGCACCGGCGGCCAATTGGAGGGACACTTTCTTTACTTTCATGGCCCCTGTTTCTCCCCGCCGGCAGGACCTGCCTGAAGTTTGCAGGGACATCTTGGTTGATTATTCGAAAGAAATAGCGAAGCTTGGGGAATTGGTATTTGAGCTACTTTCGGAGGCTCTTGGTCTGAAATCAACCCATCTCCTTGACTTGGACTGCAACGAGGGACTAGCTCTCGTGTGCCACTACTATCCGCCATGTCCCCAGCCTGAACTCACCATTGGCGCCACCGAGCACTCCGACGATACCTTCATCACCGTCCTGCTGCAAACCATATCGGAGGTCTTCAAGTGCTTCAACACAACAAATGGGTGGATATTCCTCCCGTTCCTGGAGCCCTCGTCGTCAATGTTGGCAGCTTATTACAGGCAACTAGTAACGAATGACCGATTCGTAAGCTCGGAGCACAGAGTGTTGGCGAACAGCGAAGGTTGTCCGAGAGTATCGGTGGCAAGTTTCTTCACCACCGGGCCTCTTCCGACCTCCAAACGTTATAGACCCATCGAAGAATTGTTGTCGGAAGAAAATCGTGCCAAGTACCGAGAAATCACCGTTAGGGAATACAATCTCTACTTTGCTGAAAAAGGGTTGGATGGGACCTCTGCTCTCTCACATTTCAGGCTTTGA 1122 50.8 MVAVDKVSLTPVSKLDDAFDRASELKAFDETKAGVKGLVDAGVVEIPRIFYRPTKIDDSSSVETHLGVPVVDLEDVDKDPFKRREIVDKIREASETWGFFQAVNHGVPARLQEEVINGVRRFYELDSEVKKQYYTRETTAPFVYNCNFDLFSAPAANWRDTFFTFMAPVSPRRQDLPEVCRDILVDYSKEIAKLGELVFELLSEALGLKSTHLLDLDCNEGLALVCHYYPPCPQPELTIGATEHSDDTFITVLLQTISEVFKCFNTTNGWIFLPFLEPSSSMLAAYYRQLVTNDRFVSSEHRVLANSEGCPRVSVASFFTTGPLPTSKRYRPIEELLSEENRAKYREITVREYNLYFAEKGLDGTSALSHFRL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8492165 8493891 + Carg06212-RA Car06g01145 150881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01145 373 Pfam 2OG-Fe(II) oxygenase superfamily 224 320 IPR044861 -
Car06g01145 373 Pfam non-haem dioxygenase in morphine synthesis N-terminal 68 163 IPR026992 -
Car06g01145 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 322 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01145 - - - csv:101211800 510.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01145 Car08g00966 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01145 Car-Chr6:8492165 Car14g01619 Car-Chr14:13034122 5.22E-144 dispersed
Car06g01145 Car-Chr6:8492165 Car06g01146 Car-Chr6:8493914 3.45E-128 tandem
Car14g01618 Car-Chr14:13032718 Car06g01145 Car-Chr6:8492165 1.09E-141 wgd
Car06g01145 Car-Chr6:8492165 Car08g00966 Car-Chr8:6442410 7.69E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g668 . . . . . . . Bma05g01073 Cmo08g01066 . . . Car06g01145 . . . . . . . . . . . . . . . . . . . . . . . Csa02g01076 Chy05g00336 Cme06g00508 . . . . Bpe05g00863 Bpe13g00564 . . . Cmo06g01338 . Cma08g01091 . Car08g00966 . . . . . . . . . . . . . . . . . Lsi09g01246 Csa03g01223 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01145 Car_Chr06 FPKM 17.567493 19.488438 18.006489 20.438984 28.644855 23.904655 30.015659 17.727392 17.548866 19.632359