Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g01150 | ATGGGTCTGGCGAATCCTTGGTGGACCACGCAGGTGGGGCTGCCGGGGCTGGATCATCATCACCCGGCGGCGGTCAACTCACCAATCTTCAAACAAAGCGATGAAAACAGCGGCGGAGGAAGTGGAAGCCGAGAGGACGACGATGACGACAACAACCGTGATGAGCCGAAAGAAGGTGCTGTGGAAACCGGAAACCGGAGACCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCCATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTTCTAGAGGTGGCTGCCGGATCTGACGTGGCGGATTCAATCGCCCAATTCGCTCGGAAGCGCCAGCGTGGCGTCTGTGTCCTCAGTGCAACCGGCTTGGTCGCTAACGTCACGTTACGTCAGCCTACTTCTCCCGGTTCGGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCGTTTTTACCCGGTCCAGCCCCACCCGGATCCACCGGGCTGACCGTTTACTTGTCCGGCGGTCAGGGGCAGGTTGTCGGCGGGAGCGTTGTTGGGTCGCTTGTGGCGGCCGGTCCTATTATGGTAATTGCTGCTACTTTTTCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGAACCGGAGGATCATGAAATTGGCAGTGGATCCGCCACACACGGCGGCGCTACAAGCCCACCACAGGAAATTAGAGGCGGTGGGCAGATGCCGACAGGGATGCCGGATCCCACTTTGCCGTTGTATAATTTACTGCCCGACATGATGCCCAACGGCGTTCAGCTCGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA | 852 | 57.28 | MGLANPWWTTQVGLPGLDHHHPAAVNSPIFKQSDENSGGGSGSREDDDDDNNRDEPKEGAVETGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPTSPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFSNATYERLPLEEPEDHEIGSGSATHGGATSPPQEIRGGGQMPTGMPDPTLPLYNLLPDMMPNGVQLGHDGYAYVRPPY | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8516857 | 8517864 | + | Carg06207-RA | Car06g01150 | 150886 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g01150 | 283 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Car06g01150 | 283 | MobiDBLite | consensus disorder prediction | 217 | 255 | - | - | |
| Car06g01150 | 283 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 94 | 207 | IPR005175 | - | |
| Car06g01150 | 283 | ProSiteProfiles | PPC domain profile profile. | 90 | 231 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00182 | Car-Chr4:1007855 | Car06g01150 | Car-Chr6:8516857 | 7.42E-72 | dispersed | |
| Car04g01075 | Car-Chr4:6193419 | Car06g01150 | Car-Chr6:8516857 | 6.84E-73 | dispersed | |
| Car04g02832 | Car-Chr4:21551383 | Car06g01150 | Car-Chr6:8516857 | 1.80E-55 | dispersed | |
| Car06g01150 | Car-Chr6:8516857 | Car12g01114 | Car-Chr12:10848560 | 2.10E-79 | dispersed | |
| Car14g01614 | Car-Chr14:13016584 | Car06g01150 | Car-Chr6:8516857 | 9.39E-155 | wgd | |
| Car17g00156 | Car-Chr17:964357 | Car06g01150 | Car-Chr6:8516857 | 1.92E-65 | wgd | |
| Car05g01151 | Car-Chr5:10998556 | Car06g01150 | Car-Chr6:8516857 | 4.06E-93 | wgd | |
| Car06g01150 | Car-Chr6:8516857 | Car08g00972 | Car-Chr8:6470855 | 8.88E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g01150 | - | - | cmos:111452940 | 508.449 |