Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01157 ATGCTTCCTCTTCACCAATGCATCGCCCCCCTCCTACTTCACTTCATCTTCCTCGCACCTTTTTGGTTGGCCTTAGCTCAGAATCATGAGGACCCAACCATCAGAACCATGGAGGCTTTCTCCGGCTATCCTCTTCACGAGCCTTCCTCCTCTTCTATCCCAAACCCCATTTCTTCTCTCCTCGTCGATGCGGATTCCTTGGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCTCCTTCCCCATCGGTTACCAGGGTTCTTTACTCTGAAAAGGATAACTTGATGGGGCTCTCTGGTCTCTTTGTTAGAGAGGATGCTGTCGGTAACATATTCGGTAGATGGGAGGGCTCTGAACCAGAGCTTCCTGCTGTTGCAACAGGCTCTCATGTTGATGCAATTCCATTCTCTGGCAAATACGATGGAGTTGTTGGTGTTTTAGGTGCTTTAGAAGCCATCAATGTCTTGAAAAGGTCGGGGTTCAAACCAAAGAGGTCTCTAGAAATTATCTTCTTTACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGATGGCAGGGAGTGATGCACTTGCTAAAGCTTTGGAGACAACTGTTGATGCTCAGAATATATCTTTTATTGAAGCTGCTAGCTCTGCTGGGTACTTGACTGATTCAGCTCAGATATCAACGGTGTTTCTGAAGAAAGGAAGTTACTCTGCTTTCCTGGAATTGCACATAGAGCAGGGGCCCATTCTGGAGGAAGAAGGTATATCTATAGGAGTAGTGACTGCCATTGCAGCTCCTGCTAGTATAAAGGTGGAGTTTGAAGGCACTGGAGGCCATGCCGGTGCTGTACTGATGCCATATAGAAATGACGCTGGACTGGCAGCAGCTGAGCTAGCACTAGCAGTTGAGAAGCATGTATTGAGCTCTGGATCGATCGATACTGTCGGTACCGTTGGTATTCTGGAGCTTCATCCTGGAGCAATCAACAGCATTCCAAGCAAATCACATCTGGAAATAGACACCAGAGACATTGATGAAGAACGCAGAAATACTGTCATTAAGAAGATTCATGAATCTGCAACTGAAATAGCTCAAAGGCGACGGGTCAAACTCTCAGAATTCAAAATTATAAACCAGGATCCACCAGCACATTCTGACAAATCAGTAATAGAGGCAATGGTTTCTTCAACAAAAGAGCTCAATCTCACACACAAGCTGATGATCAGCAGAGCATACCATGATTCACTGTTTATGGCCAGGATATCCCCAATGGGCATGATATTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCTGAAGAATTCTCCTCTCCCCAGGATATATCAAATGGAGTCAAGGTATTAGCCCTTACCCTTGCCAAATTGTCCCTGCAGTGA 1404 46.01 MLPLHQCIAPLLLHFIFLAPFWLALAQNHEDPTIRTMEAFSGYPLHEPSSSSIPNPISSLLVDADSLVKQIEELSTFSDSPSPSVTRVLYSEKDNLMGLSGLFVREDAVGNIFGRWEGSEPELPAVATGSHVDAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEIIFFTSEEPTRFGISCLGSRLMAGSDALAKALETTVDAQNISFIEAASSAGYLTDSAQISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASIKVEFEGTGGHAGAVLMPYRNDAGLAAAELALAVEKHVLSSGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNTVIKKIHESATEIAQRRRVKLSEFKIINQDPPAHSDKSVIEAMVSSTKELNLTHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEFSSPQDISNGVKVLALTLAKLSLQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8548503 8551501 + Carg06200-RA Car06g01157 150893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01157 467 Pfam Peptidase family M20/M25/M40 128 462 IPR002933 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01157 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01157 Car-Chr6:8548503 Car13g00688 Car-Chr13:8243473 7.46E-43 dispersed
Car06g01157 Car-Chr6:8548503 Car18g00259 Car-Chr18:1495090 1.98E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01157 Car_Chr06 FPKM 13.458138 15.003384 12.069931 12.990999 16.632507 16.176788 17.152102 15.349775 13.136194 13.794709