Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01170 ATGGAACCCCAAATCCGCCATGGCTGCTCTCTTCTGCTCTTCATCTTCTTCATCTTCTTCATCTTCCCCTTCCCTCCCTCCTCCGCCCAATCCCCCGACGCCGATGGCTACTCCTGCACCGCCAACCACACCGCCGCCCCATGCCAGGCCTACGTCTTCTACCGAGCCACCGCCCCCGATTTCCTCGACTTAGCCACTATCGCTGACCTCTTCTGGGTCAGCCGCCTCGAGATTTCTCGACCCAGTAACATCTCCGACTCCAACGCTACCTTCCCCCTCGTCTCCGGCCAGCCCCTCTTCATCCCCATCACCTGCTCCTGCAACTCCGTCAACGCCTCTGTCAGCATCTCCTACGCCAATCTCTCCTACAAAATCAACTCCGGCGACAGCTTCTGGCTCGTCTCCACCTCCAAGTTCCAGAATCTCACCACGTTTCAATCCGTCGAAGTCGTTAACCCCACTTTAGTCCCCACCAATCTCTCCATCGGCGTCGACGTCGTTTTTCCCATTTTCTGCAAGTGCCCTAACTCCACCCAATTCCAAAACCGCGTCAATTTCATGGTCTCTTACGTTATCCACCCACAGGACACACTGTTTTCCATCGCTTCAAGGTTCGGAGTTCCAACATCGGAAATCGCCGCCGCGAACCGCCCCAATCCGAAGGCGTTCGACACAATCTTCATCCCGGTAAGTCGTCTCCCGAATTTGACGCAACCCATTATTCTTCCACCGCCGCCAAAGCAGCCGCCGGCTCCGGTAAGAGAGGGAAAAAACAGGGCAGTAACAGGGTTGGCGATTGGGATGGGGATTTCTGGGTTTTTACTGATTTTAATGGTGGGTTTGTGGGTGTGTGGAGTGGGAAAGCGGCGGAGAAGTGAGAGAGAAATGAAGGAGGGAATTGAGAGGCAGAAATTGCAGGAAGTGGGGATTTGGAAGGGAAAGGGGAAAGAAATGGAGATGGATTTAATGGCGGATGTGTCGGATTGTTTGGATAAATACAGAGTGTTCAAGATCGAGGAGCTGAATGAAGCAACAAACGGGTTTCATGAGAGGAGCTTGATTCAGGGATCGGTTTACAAAGGGAGTATCAATGGAGTTGAGTATGCTATCAAGAAGATGAAGTGGAACGCCTATGAACAGCTCAAGATCTTGCAGAAGGTGAATCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGTGTTGACCCTGATGATGCAACCTGCTACTTAATTTATGAATATGTAGAGAACGGTTCTCTACATTCATGGCTACACGGAAGCGAAAAGCGAAAATTGAACTGGAGAACGAGATTGAGGATTGCGATTGATGTTGCTAACGGACTACTCTATGTTCACGAGCACACGAGGCCACGAGTTGTCCACAAAGACATTAAAAGTAGCAACATTTTGTTGGATGCAAGCATGAGGGCTAAGATAGCCAACTTTGGACTTGCGAAGTCAGGATGCAATGCTATAACCATGCACATTGTTGGAACTCAAGGCTATATAGCACCCGAATACATAGCGGATGGAGTCGTGTCGACAAAGATGGACATCTTTGCATTTGGGGTTGTTTTGCTCGAACTCGTCTCTGGTAAGGAGGCCATTGACGAGGACGGAAGGGTTCTATGGATGCGAGCGAGTGGGTTTTCGGAAGGGAAAGAGAAGGAGAAGTTAGAGAGGTTGAAGAATTGGATTGATGAAGCTCTTTTCGAGCAATCGTGCCCGATGGAGAGCGTGATGGATGTAATGAACGTGGCTGCTAGTTGCCTGCAAAAGGACCCGACGAAGAGGCCGAGCATGGTCGAGGTGGTCTATGCACTGAGCAAGAGCGACGACGCCGTGTTCGACTTCTCCGATGATACTCTATCAGCACCTATCTTAACAGCTAGGTAG 1893 50.5 MEPQIRHGCSLLLFIFFIFFIFPFPPSSAQSPDADGYSCTANHTAAPCQAYVFYRATAPDFLDLATIADLFWVSRLEISRPSNISDSNATFPLVSGQPLFIPITCSCNSVNASVSISYANLSYKINSGDSFWLVSTSKFQNLTTFQSVEVVNPTLVPTNLSIGVDVVFPIFCKCPNSTQFQNRVNFMVSYVIHPQDTLFSIASRFGVPTSEIAAANRPNPKAFDTIFIPVSRLPNLTQPIILPPPPKQPPAPVREGKNRAVTGLAIGMGISGFLLILMVGLWVCGVGKRRRSEREMKEGIERQKLQEVGIWKGKGKEMEMDLMADVSDCLDKYRVFKIEELNEATNGFHERSLIQGSVYKGSINGVEYAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCVDPDDATCYLIYEYVENGSLHSWLHGSEKRKLNWRTRLRIAIDVANGLLYVHEHTRPRVVHKDIKSSNILLDASMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFAFGVVLLELVSGKEAIDEDGRVLWMRASGFSEGKEKEKLERLKNWIDEALFEQSCPMESVMDVMNVAASCLQKDPTKRPSMVEVVYALSKSDDAVFDFSDDTLSAPILTAR 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8612044 8615012 - Carg06187-RA Car06g01170 150906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01170 630 ProSiteProfiles Protein kinase domain profile. 335 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01170 630 ProSiteProfiles LysM domain profile. 188 234 IPR018392 -
Car06g01170 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Car06g01170 630 Pfam Protein kinase domain 358 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01170 630 Pfam LysM domain 190 219 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01170 - - - cmo:103483654 1013.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01170 Car14g01593 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01170 Car-Chr6:8612044 Car07g00737 Car-Chr7:3806444 4.64E-105 dispersed
Car02g00380 Car-Chr2:2847265 Car06g01170 Car-Chr6:8612044 1.03E-114 transposed
Car14g01593 Car-Chr14:12919959 Car06g01170 Car-Chr6:8612044 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88953 PF00069 Pkinase 2.20E-39 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01170 Car_Chr06 FPKM 11.548992 14.499179 8.554878 7.781679 17.390661 11.951177 17.74004 7.967151 7.691623 7.94102