Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01179 ATGACAGAGAGCTCGGAGCAGCACCTTGTAGTCACACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGCAAAGGCCACCCGAATCTCGAACACCAAAACACCAAAAACAGAGCCCGAAGAAGAAGCAGAGGCGGTCGGAAATCCGATCAGGGAGAAGTCTTTATGATGCCAAATTCTCGGCCCTGCACGGTGGCACGTAAACCTAACGCACCGGAGATTACCGCCGGAGCTTTAGTGGCGAGTACTAATCCAAATCCAAATGGTGCAAACAATTCAAGCAAGTCTGTGAGTTTTGCCCCACGACCTGGATTTGGGCAAGTTGGGACAAAGTGTATAGTAAAAGCAAATCATTTCTTTGCAGAGTTACCCGACAAAGATTTGAATCAATATGATGTTACAATCACTCCAGAAGTGGCCTCAAGAACTGTGAACAGAGGCATTATGGCTGAATTGGTGAGATTATATAGAGAATCTGATCTGGGAAAGAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAGAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGATTATAAAGTGGTCATTAAGTTCGTTGCAAGGGCAAATTTGCAGTATTTGGGTCAGTTCCTTGCCGGTAAGCGTGCCAATGCACCACAAGAAGCCATTCAAATACTGGACATTGTCTTGAGAGAGCTATCATCCAAAAGGTACTGTCCTATAGGAAGATCCTTCTTTTCTCCTGATATCAGATCACCTCAACAGCTCGGCGATGGCCTAGAATCATGGCGCGGTTTTTACCAGAGTATAAGGCCTACTCAAATGGGACTGTCTCTGAACATTGATATGGCTTCAGCTGCATTCATCGAGCCTCTCCCTATCCTCGAGTTTGTTGCTCAGCTTCTCGGGAAAGATGTTTTGTCTCGGCCACTGTCTGATTCCGATCGCGTAAAGATCAAAAAGGCTCTTAGAGGGGTGAAAGTCGACGTAACGCACCGGGGTAATGTAAGGCGTAAGTATCGTATTTCGGGGCTAACGTCACAGCCTACAAGAGAACTAGTGTTTCCTGTTGACGACAACTCGACCATGAAGTCGGTTGTCGAGTACTTCCAGGAGATGTATGGCTTCACCATCCAACATGCTCATCTGCCTTGCCTCCAAGTAGGAAATCAGAAGAAGGCCAATTATTTACCAATGGAGGCCTGCAAAATTGTTGGGGGACAAAGGTATACAAAGAGATTGAATGAGAAACAAATAACTGCACTTCTGAAAGTCACGTGTCAAAGACCGAGGGATCGAGAAAACGACATTCTAAAGACTGTTCAACATAATGCCTATAACAACGATCCTTATGCAAAGGAGTTTGGGATTAATGTTAGTGAAAAGATGACTTCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATACCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAATAAGAAAATGATTAATGGAATGACGGTTAGTCGGTGGGCGTGTATCAACTTCTCTAGGAGCGTGCAGGAGAGCGTTGCTCGTGGATTTTGTTCTGAACTTGCTCAAATGTGTCAAGTTTCTGGAATGGAATTCAATACAGAACCAGTTATTCCAATATACAATGCTAGGCCAGAACAAGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACTAAAGGAAAAGAGTTAGAGCTATTATTAGCTATCTTACCCGACAGTAACGGATCGCTTTACGGTGATCTTAAGCGAATCTGTGAGACGGATCTTGGTTTAATATCACAATGCTGTCTTACAAAATATGTGTTCAAGATTAGTAAACAGTATCTTGCTAATGTTTCATTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCGCTCGTAAGCGACATACCGACTATAATATTTGGAGCAGACGTGACTCATCCAGAGAACGGCGAAGATTCAAGCCCTTCGATAGCTGCTGTTGTAGCATCTCAGGATTGGCCTGAAGTGACAAAGTATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGGGGCATGATCAGGGATCTTCTGGTTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTTAGTGAAGGACAATTCTATCAAGTATTACTTTACGAGTTAGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACTGAATTACCAGCCACCCGTGACGTTCATCGTCGTACAAAAACGACATCACACCCAACTGTTTGCCAACAACCATAGAGACAGAAGTAGCACAGACAGGAGTGGAAACATTTTACCTGGCACCGTAGTCGACTCCAAAATATGCCACCCGACAGAATTTGATTTCTATCTTTGTAGCCATGCTGGAATTCAGGGGACAAGCCGACCAGCTCATTACCATGTTCTTTGGGATGAAAACAATTTTACAGCAGATGGGATTCAGTCCTTAACCAATAATCTTTGCTACACGTATGCAAGGTGTACGCGTTCGGTTTCTATCGTCCCTCCAGCATACTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAAGAGAATGGCACGAGCGGTCGTTCTGCTAAGAGTGCGACCACCGGGGTTCGCCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAA 2877 44.21 MTESSEQHLVVTPHFQNSVQKAQKPIQNGKGHPNLEHQNTKNRARRRSRGGRKSDQGEVFMMPNSRPCTVARKPNAPEITAGALVASTNPNPNGANNSSKSVSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRGIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWREFNIKLVDEEDGVSGPKRERDYKVVIKFVARANLQYLGQFLAGKRANAPQEAIQILDIVLRELSSKRYCPIGRSFFSPDIRSPQQLGDGLESWRGFYQSIRPTQMGLSLNIDMASAAFIEPLPILEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVDVTHRGNVRRKYRISGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILKTVQHNAYNNDPYAKEFGINVSEKMTSVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNTEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDSNGSLYGDLKRICETDLGLISQCCLTKYVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLELNYQPPVTFIVVQKRHHTQLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQENGTSGRSAKSATTGVRPLPALKENVKRVMFYC 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8661963 8669631 + Carg06178-RA Car06g01179 150915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01179 958 Pfam Piwi domain 601 920 IPR003165 GO:0003676
Car06g01179 958 MobiDBLite consensus disorder prediction 1 67 - -
Car06g01179 958 MobiDBLite consensus disorder prediction 1 35 - -
Car06g01179 958 ProSiteProfiles Piwi domain profile. 600 921 IPR003165 GO:0003676
Car06g01179 958 Pfam PAZ domain 338 442 IPR003100 GO:0005515
Car06g01179 958 Pfam N-terminal domain of argonaute 116 250 IPR032474 -
Car06g01179 958 ProSiteProfiles PAZ domain profile. 312 426 IPR003100 GO:0005515
Car06g01179 958 Pfam Argonaute linker 2 domain 452 498 IPR032472 -
Car06g01179 958 Pfam Argonaute linker 1 domain 260 309 IPR014811 -
Car06g01179 958 Pfam Mid domain of argonaute 509 586 IPR032473 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01179 Car14g01580 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01720 Car-Chr4:9860567 Car06g01179 Car-Chr6:8661963 0 dispersed
Car06g01179 Car-Chr6:8661963 Car13g00944 Car-Chr13:9613301 0 dispersed
Car13g00206 Car-Chr13:2304489 Car06g01179 Car-Chr6:8661963 0 transposed
Car14g01580 Car-Chr14:12873168 Car06g01179 Car-Chr6:8661963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01179 K11593 - csv:101221352 1806.57