Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01180 ATGCAGCTTCTTAACTCCGAAGAAACGGTCGCCGACTCGTCGGAAAGCGGCCTTGGGGAGGAAAGAAATTTGAAATCTTCTAACTTGGTTTCGTTTGAGGGTGATAGTGGAAACGAAACCGATGATTCGGTTATTGATGTATCGGGGAAAAACTTGGATTCTCACTTCTTGGAGGGTTCCCACAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTCAATTTGATTCCGAAATCAGTTGGCAACTTTAGAGAATTGAGAATGCTGAAGTTCTTCGGGAACGAGATTAATTTGTTTCCGCCGGAGTTGAAGAACTTTTCGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACGAACTGAAGGATCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCTAAACCTTCGTCGTTTCCAATTCTTAGTGAGATCGCTGGTCTTAAGTGCTTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTCCTTCCTCCTGAAATTGGCTGCCTGGATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCCTTGATATCCTTGAGAGTTGCTAATAACAAGTTGGTGGAACTACCTCCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAATTTGGATCTCTCAAGTAATAGGTTAACGTCATTGGGATCTCTTGAACTTGTATCTATGCATAGCCTTAAGAACTTAAATTTACAGTTTCTTTGGCAAGTTGGTAATTGTAACCTTTCTGTCCAATCTAATGGTTTAGATCCTTACAATAAGTTTCTAAGAAGCTGTCAGATACCCTCCTGGATATGCTGCAACTTTGAAGGAAATTGTGGAGACAAAATAGCTGATGAAGAATGTATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCCAGACAATAGTGATAATTTTCCACATAAAGGTATTCGTAATCTCTCATCAAACCTATTAATGGGATCTTCAACAAACAGTAGATCATTTGCATCTCGAAAATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAAAAAGCTCGCCAGGAGCGTTTGAATAATAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGACCCATGAAAATCATGAACTTGGGAGGCTTGATACTGCTCCTACTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAGACCAGTCATGGAAAAGATGAAGGGGAAGATCTTATCAAGAACCATGAGAAGGACAATTTTGATGTCAAAAAGGAACTACCTGTGGAGGATTGCTCAGGTATCTGTCTTGGTGCTGCAGGAAAAATGACAAGGGACGACAATGAATGTCGTGAGCCCAGTGAGACTTTGCCACTACCAGGAAATGAAGCACATGACCTAGAAGGGTCATCATCCCAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAATATATCATTCTGCAGCGTTGAAGATTATGTACCGGATGGATTTTATGATGCAGGGCGTGATCGTCCCTTTATGTCATTAAGGAATTATGAGCAAAATTTTCATCTTGATTCTCGTGAAGTCATTCTTGTCAACAGGGAACATGATGAATTATTAGACTCTACAGTGATATCTGCGAAGTCATTGGTACTTCGTCTAAAGCAGATTAACCGAACCCAAGAAAGACATCAAGTTCTTGATGACATGCATATCATACAAGTCCTTGCTCTATTTGTGTCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCCAAGTATCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGAATAATCTTACTGCGTCCACTAAATTAACGGTGGATAATTATGAGGATATTCTTTTCACTGATATCTGTGAGAAATCTCTTCGTGCTATTAAAGCTAGTCGAAATTCTGTCATAGTTCCCCTTGGAGCTCTGAAATTTGGTGTGTGCAGGCATAGAGCGCTTCTTCTTAAGTATTTGTGTGACCGAATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGGTCTTAGTGAAAAGAGGCAATGCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATACGAGAAGAAGCAGATCCCGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCAGAACTTCCTATTTCTTTCGGAATGTCACCCAGTCCAGGGTTTTCCTTCCCGTCTCTGTCCAACTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGATAAAGTGCAAACTTGGGTCAGTTGAGGCTGCTGCAAAGTTACGGATGCTTGAAGTTTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATAGTACAGATGTATGGGCATCAGATATCTTCTGAATGGATTCCTTCTGAGGATGGAAAACCGAAGTGCCGGTTACTTAGATCTGCAATTTTTTTAGAGCACGTTAAAGGGGGATCTTTAAAGAGCTACTTGGATAAGTTGTACCAAGCTGGGAAAAAGCACATTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGTGACATCAAAAGTGAAAATGTTTTGATAGATTTTGATGAAAATTCTGATCGAGTTCCCATGGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTCCTTGCACACTTGTTGCATTGCCCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAATGTTTATGGACTGGAAGTGGATATTTGGTCATTTGGATGTCTGTTATTTGAACTGTTGACTTTTCAAATTCCGTACTTGGGGCTGACAGAATTGCAGATTTTCGATCAACTTCAGATGGGTAAACGACCAGAATTGATAGGAGAGCTTGAGGAGGAGGCACTAGGGTTGATAAAGGAAAGCGCAATGTCTCAATCTGTTCAAGAATCAGATGGTTCAGAGAAAGACCAAGAAACCAAAACATTCTTGATCGACTTGTTTTGCAAGTGTACTCAAAAAAATCCGAACGACCGACCAACAGCGGAAGAACTACACAAAATTCTGCTTGAGCACACAGCCAAAGTGAAATCTTTAGAAAAACTAGCCACATGA 3450 40.99 MQLLNSEETVADSSESGLGEERNLKSSNLVSFEGDSGNETDDSVIDVSGKNLDSHFLEGSHSSVKGLYIFRNAFNLIPKSVGNFRELRMLKFFGNEINLFPPELKNFSGLECLQVKLSSPGFGGLSLHELKDLKELELSKIPPKPSSFPILSEIAGLKCLTKLTVCHFSIRFLPPEIGCLDSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLKNLNLQFLWQVGNCNLSVQSNGLDPYNKFLRSCQIPSWICCNFEGNCGDKIADEECISSTVEMDVYEATIPDNSDNFPHKGIRNLSSNLLMGSSTNSRSFASRKSGKRWRRRHYLQQKARQERLNNSRKWKGVDHHTEVKTHENHELGRLDTAPTSETTVEDSSVIEELYDSKETSHGKDEGEDLIKNHEKDNFDVKKELPVEDCSGICLGAAGKMTRDDNECREPSETLPLPGNEAHDLEGSSSQISKDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNNISFCSVEDYVPDGFYDAGRDRPFMSLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINRTQERHQVLDDMHIIQVLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGDRNNLTASTKLTVDNYEDILFTDICEKSLRAIKASRNSVIVPLGALKFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVVLVKRGNALVRMVVDACRPNDIREEADPEYFCRYIPLSRAELPISFGMSPSPGFSFPSLSNCDEIEKAPSSSVIKCKLGSVEAAAKLRMLEVCESSFDEIRNFEYSCLGEVRILGALKHSCIVQMYGHQISSEWIPSEDGKPKCRLLRSAIFLEHVKGGSLKSYLDKLYQAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENVLIDFDENSDRVPMVKLCDFDRAVPLRSSLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPNVYGLEVDIWSFGCLLFELLTFQIPYLGLTELQIFDQLQMGKRPELIGELEEEALGLIKESAMSQSVQESDGSEKDQETKTFLIDLFCKCTQKNPNDRPTAEELHKILLEHTAKVKSLEKLAT 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8675117 8683066 - Carg06177-RA Car06g01180 150916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01180 1149 MobiDBLite consensus disorder prediction 505 525 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 382 403 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 1 37 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 341 364 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 419 441 - -
Car06g01180 1149 Pfam Ethylene-responsive protein kinase Le-CTR1 691 768 - -
Car06g01180 1149 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Car06g01180 1149 MobiDBLite consensus disorder prediction 382 441 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 20 37 - -
Car06g01180 1149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672|GO:0006468
Car06g01180 1149 MobiDBLite consensus disorder prediction 404 418 - -
Car06g01180 1149 MobiDBLite consensus disorder prediction 470 525 - -
Car06g01180 1149 Pfam Protein kinase domain 857 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01180 1149 MobiDBLite consensus disorder prediction 341 355 - -
Car06g01180 1149 ProSiteProfiles Protein kinase domain profile. 812 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01180 1149 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01180 - - - csv:101218031 1892.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01180 Car14g01579 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01180 Car-Chr6:8675117 Car18g00352 Car-Chr18:2176811 2.57E-22 dispersed
Car14g01579 Car-Chr14:12861913 Car06g01180 Car-Chr6:8675117 9.37E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88954 PF00069 Pkinase 7.70E-38 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01180 Car_Chr06 FPKM 0.495495 0.0 0.0 0.550163 1.51042 1.323724 0.918647 0.082285 0.084949 0.0
Car06g01180 Car_Chr00 FPKM 0.53272 0.0 0.0 0.580855 0.0 1.440515 0.728289 0.079807 0.096414 0.0