Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01181 ATGATGCTCGCAACGCTCAAAGCGGAAGAACAGAGCCAGCAACTTCAGATTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGATAAATTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGCACTTGACAGGGATAAAAGGTTTATCCGAAGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGATGTTCTGCTCAGGAGAAAGTCTGTAGTTCGTATTACGACTGGAAGTGGAATTGAAACTCTAGCGATCACGGAAGCTTTTGGAGAATTCAGCTTCCCACCAACATGCGGGGAGGGAATGGAAAGGTTGCATACATCGACACTGAAGGCACTTTGTATCCTCTTTCGAAGCTTCTTTTATCATGTCGTTATTGCGGCACGTCTAGTGAATTCAAATGATTATCTTCAGAGATGTTCCTCTTTTCAATATGTCCTCTCCTTAACCACACGCACTTGCAGCCGACCTGATCGAATTGTGCCTATAGCTGAAAGATTTGGCATGGACCCGGGAGCTGTGCTAGATAATATCATATATGCTCGTGCCTACACCTACGAACATCAGCATAACCTCTTGCTCGGCCTTGCGGCAAAGATGTCTGAAGAACCGTTTAAACTTCTGATTGTTGACTCTATCATTGCACTTTTTCGAGTGGATTTCACTGGAAGAGGAGAACTTGCAGAGCGCCAGCAAAAACTGGCGCAGATGCTGTCCCGATTAACTAAAATTGCAGAAGAGTATAATGTAGCAGTTTACATGACCAACCAAGACCCAGGTGGAGGAGTGTTCGTATCAGACCCCAAAAAACCAGCAGGAGGCCACGTTCTTGCCCATGCTGCCACGGTAAGACTGATGTTCAGGAAAGGCAAAGGAGAACAACGCATCTGTAAGGTGTTCGATGCTCCTAATCTGCCAGAGTCTGAAGCTATATCCTTGACTCACATC 1056 45.45 MMLATLKAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDVLLRRKSVVRITTGSGIETLAITEAFGEFSFPPTCGEGMERLHTSTLKALCILFRSFFYHVVIAARLVNSNDYLQRCSSFQYVLSLTTRTCSRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEYNVAVYMTNQDPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAISLTHI 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8684315 8687788 + Carg06176-RA Car06g01181 150917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01181 352 Pfam Rad51 185 347 IPR013632 -
Car06g01181 352 ProSiteProfiles RecA family profile 2. 297 346 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Car06g01181 352 Coils Coil 1 21 - -
Car06g01181 352 ProSiteProfiles RecA family profile 1. 192 294 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01181 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01181 Car-Chr6:8684315 Car10g00717 Car-Chr10:3721911 1.11E-72 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01181 Car_Chr06 FPKM 0.810021 1.057863 0.208779 0.827884 1.67872 1.677216 2.594844 0.420897 0.212951 0.414951