Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01192 ATGGGTAACGCAGATTTTGAGTGCCCTCACCGAGTCGCCATTCCACCAACCAAGCCATTCTTCGAGTCCTTAAGCTCCAACCTCAAAGAAACCTTCTTCCCCGACGACCCTTTCAAACAGTTCAAAAACCAGCCTTTAGGACCCCAAATTCTCCTCTGGCTTAAGTACTTCATCCCCATATTCGAATGGGCTCCTCATTACACCCTCGACTTCTTCAAATCCGACCTCGTGTCCGGTGTCACCATCGCCAGTTTAGCCGTCCCTCAGGGCATTAGCTATGCCAGCTTGGCTAGCATCCCTCCCATCATCGGACTATATTCGAGCTTTATTCCTCCGTTGATATACGCCATGCTTGGTAGTTCGAAAGACGTGGCAGTTGGGACAGTAGCAGTAGCGTCGTTGCTCATGGCTGCTATAATGGGGAAGGAAGTCAGCCCCGTCGAACATCCGAAACAATACCTTCAATTGGTTTTCACTGCCACATTCTTCGCTGGAGTTTTTCAAGCTTCTCTCGGTTTTCTCAGGCTGGGGCTTATTGTTGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGTGCAGCAACCGTGGTTTGTCTTCAGCAGCTAAAAGGAATATTAGGATTGGTTCATTTCACGCACGAGACCGATATTGTATCCGTTATAACCTCTGTTTCCTCTCAAGTTCATCAGTGGAGATGGGAAAGTATTGTGTTGGGCTGCTGTTTTCTCTTCTTTCTCCTCCTCACCCGATACCTTAGCAAGAAGAAACCGATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACGTCGGTCATCTTGGGGAGCCTTCTCGTCTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCACCATCTGCGACTGATTTAGCATTTGGATCTCCTCATCTTTTAATTGCCATCAAAACAGGGATCATCGTCGGAATCATTGGCCTTGCTGAAGGAGTAGCAGTGGGGAGAAGTTTTGCTGCATTTAAGAATTACCACACTGATGGCAACAAGGAGATGATAGCATTTGGGATCATGAACATTGTTGGTTCCTGCACTTCTTGCTACCTGACTTCCGGGCCATTTTCAAGGAGTGCTGTGAACTTCAATGCAGGATGTAAAACTGCAGTCTCCAATATTGTCATGTCAATAGCTGTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTCGCCTCCATAATCATCACTGCTATGATTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAACTCGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATACATCGGTGTCGTCTTTGGCAGTGTTGAAATGGGCTTGATCATTGCGGTTGCACTTTCTGTGTTGAGGGTGCTTCTCATGATCGCAAGGCCAAGAACTTTAGTATTAGGTAACATTCCCAACTCCACAATTTACAGAAGCATCGATCAATACCCAACAGCTGAGCATGTGCCTGGAATTCTCATCCTTCAATTGGAAGCACCAATCTATTTTGCTAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACTGACGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTGGACCTTTCCGGCGTGAGTAGCATTGATTCAAGTGGGATCAGCATGCTTAAAGAGATTAAGAAGAGTATTGAAAGAAAGGGGTTCAAACTTGTTCTTGCAAACCCGAAAAGTGAGGTGATAAAAAAGCTAAACAAGTCGAACTTCATCGAGGCGATCGGGCACGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACGGCCTGCAACTTCGTACTCCAAACATGGAAGCCAAGTCCTGTTGCTGCTGCTGAATTAGATTCAGCTGTGAACAGTGTGTAA 1953 45.78 MGNADFECPHRVAIPPTKPFFESLSSNLKETFFPDDPFKQFKNQPLGPQILLWLKYFIPIFEWAPHYTLDFFKSDLVSGVTIASLAVPQGISYASLASIPPIIGLYSSFIPPLIYAMLGSSKDVAVGTVAVASLLMAAIMGKEVSPVEHPKQYLQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGILGLVHFTHETDIVSVITSVSSQVHQWRWESIVLGCCFLFFLLLTRYLSKKKPIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPPSATDLAFGSPHLLIAIKTGIIVGIIGLAEGVAVGRSFAAFKNYHTDGNKEMIAFGIMNIVGSCTSCYLTSGPFSRSAVNFNAGCKTAVSNIVMSIAVMITLLFLTPFFHYTPLVVLASIIITAMIGLINYEEVIHLWKLDKFDFVVCLGAYIGVVFGSVEMGLIIAVALSVLRVLLMIARPRTLVLGNIPNSTIYRSIDQYPTAEHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDLSGVSSIDSSGISMLKEIKKSIERKGFKLVLANPKSEVIKKLNKSNFIEAIGHEWIYLTVGEAVTACNFVLQTWKPSPVAAAELDSAVNSV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8732347 8736167 + Carg06165-RA Car06g01192 150928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01192 650 TIGRFAM sulP: sulfate permease 59 622 IPR001902 GO:0015301|GO:0016020|GO:0055085
Car06g01192 650 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Car06g01192 650 SUPERFAMILY SpoIIaa-like 505 626 IPR036513 -
Car06g01192 650 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Car06g01192 650 Pfam STAS domain 504 622 IPR002645 -
Car06g01192 650 Gene3D STAS domain 483 628 IPR036513 -
Car06g01192 650 PANTHER BNAA04G05880D PROTEIN 4 645 IPR030311 GO:0008272|GO:0009507|GO:0015116
Car06g01192 650 Pfam Sulfate permease family 72 451 IPR011547 GO:0016021
Car06g01192 650 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Car06g01192 650 PANTHER SULFATE TRANSPORTER 4 645 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02235 Car-Chr4:18102058 Car06g01192 Car-Chr6:8732347 7.32E-89 dispersed
Car06g01192 Car-Chr6:8732347 Car10g00559 Car-Chr10:2824542 0 dispersed
Car08g00293 Car-Chr8:1878233 Car06g01192 Car-Chr6:8732347 0 dispersed
Car14g01569 Car-Chr14:12815470 Car06g01192 Car-Chr6:8732347 0 wgd
Car17g01133 Car-Chr17:8699382 Car06g01192 Car-Chr6:8732347 0 wgd
Car06g01192 Car-Chr6:8732347 Car08g00292 Car-Chr8:1877463 9.11E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01192 K17471 - csv:101203205 1107.05