Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01193 ATGAACATACTGAAGTTCAAACGAGGCGGGGATCTACCATCTCCGCCGCCATCTCTGTCGCCATCGCCGCCATCCCCATTTCTCCCCAACCAGAGACTCATCAAGGCCTACACAGCTCTCCAAGCATGGAAACATGCCATCACCGACGACCCGACCAACTTCACTGCCGACTGGTACGGCCCCAACGTCTGCAACTACTCCGGCGTCTTCTGTGCCCCTGCTCCCGACGACCCCGACATCCTCACCGTTGCCGGGGTTGACCTCAACAACGCCAACATCTCGGGAACCCTGCCCGACGATCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAATTCCAATCGCTTCTGCGGCACCGTCCCCAACTCCTTCCGTTTCCTCACTCTCCTCTTTGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCTTCCCTCAAATTCCTCGACGTTCGATTCAACAAATTCCACGGCGATCTCCCTTCTTCCCTGTTTGAAAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAAATTCTCACTGCCGGAGAACATCGGCAATTCCCCTGTTTCTGTGCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAATACACTCGAAGAAATTATAATCACAAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGCTGAGCAATCTCACCGTTTTCGATGTCAGTGACAACAATCTCGTTGGACCTTTGCCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATATCGCACATAACCAATTATCCGGCGAGATACCGGCGAGTGTCTGCTTGTTGCCGACATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGATGTGCCTGAAGCTTCAGGCGAGTGATGACCGAAAAAATTGTTTGCCGGAAAGACCACTACAACGCTCGCCGGAGGAATGTAAAGCTCTGTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGCACTCGACGGCCGCCACCGCCGCTTTAG 1092 51.74 MNILKFKRGGDLPSPPPSLSPSPPSPFLPNQRLIKAYTALQAWKHAITDDPTNFTADWYGPNVCNYSGVFCAPAPDDPDILTVAGVDLNNANISGTLPDDLGLLTDLALFHINSNRFCGTVPNSFRFLTLLFELDLSNNDFSGEFPSVILSLPSLKFLDVRFNKFHGDLPSSLFEKKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLEEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNIAHNQLSGEIPASVCLLPTLQNFTYSYNFFCSEPSMCLKLQASDDRKNCLPERPLQRSPEECKALYSYPVDCGVFGCTRRPPPPL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8737566 8739775 + Carg06164-RA Car06g01193 150929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01193 363 Pfam Leucine rich repeat N-terminal domain 38 71 IPR013210 -
Car06g01193 363 MobiDBLite consensus disorder prediction 1 25 - -
Car06g01193 363 Pfam Leucine rich repeat 225 284 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01193 - - - cmos:111457817 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01193 Car14g01568 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01193 Car-Chr6:8737566 Car12g01214 Car-Chr12:11564190 1.14E-146 dispersed
Car14g01568 Car-Chr14:12812508 Car06g01193 Car-Chr6:8737566 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01460 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 63.1 1.6e-56 218.4
Car09g00168 . 53 398 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 3.2e-52 204.1
Car14g01568 CST 43 368 Leucine-rich Repeat extension Gene Families AT1G62440 63.3 1.6e-48 191.8
Car05g01248 CCT,CST 71 240 Leucine-rich Repeat extension Gene Families AT1G62440 72.4 3.2e-44 177.6
Car08g00780 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.1e-44 177.2
Car12g01214 CCT,CST 68 419 Leucine-rich Repeat extension Gene Families AT1G62440 60.5 5.6e-41 166.8
Car10g00558 CCT 65 234 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 1.8e-39 161.8
Car11g00470 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.1e-39 161.0
Car17g00412 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.3e-37 155.6
Car05g01248 CCT,CST 14 417 Leucine-rich Repeat extension Gene Families AT4G13340 72.8 1.7e-66 251.5
Car12g01214 CCT,CST 13 419 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 4.1e-65 246.9
Car11g00470 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 74.5 5.9e-64 243.0
Car10g00558 CCT 38 408 Leucine-rich Repeat extension Gene Families AT4G13340 73.7 4.0e-60 230.3
Car14g01568 CST 43 370 Leucine-rich Repeat extension Gene Families AT4G13340 71.1 6.6e-55 213.0
Car09g00168 . 21 261 Leucine-rich Repeat extension Gene Families AT4G13340 65.1 9.5e-54 209.1
Car01g01460 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 2.9e-50 197.6
Car08g00780 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 9.2e-49 192.6
Car08g00779 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 3.6e-37 154.1
Car06g01193 CST 24 363 Leucine-rich Repeat extension Gene Families AT4G13340 61.5 5.2e-36 150.2
Car12g01214 CCT,CST 43 415 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 8.6e-72 268.5
Car05g01248 CCT,CST 46 417 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 1.2e-70 264.6
Car11g00470 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 73.5 1.4e-69 261.2
Car10g00558 CCT 31 409 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 4.9e-67 252.7
Car09g00168 . 16 399 Leucine-rich Repeat extension Gene Families AT3G24480 62.4 4.6e-57 219.5
Car14g01568 CST 43 370 Leucine-rich Repeat extension Gene Families AT3G24480 67.2 1.4e-53 208.0
Car01g01460 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 5.2e-53 206.1
Car08g00780 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.9e-50 197.6
Car17g00412 . 30 427 Leucine-rich Repeat extension Gene Families AT3G24480 51.5 9.3e-42 168.7
Car08g00779 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 4.8e-38 156.4
Car06g01193 CST 24 363 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.4e-36 150.2
Car14g01568 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 68.5 1.9e-68 257.3
Car06g01193 CST 17 360 Leucine-rich Repeat extension Gene Families AT3G22800 63.5 1.5e-49 194.5
Car09g00168 . 59 391 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 1.3e-45 181.4
Car01g01460 . 63 393 Leucine-rich Repeat extension Gene Families AT3G22800 54.5 2.0e-38 157.5
Car11g00470 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.1e-36 151.8
Car01g01460 . 31 401 Leucine-rich Repeat extension Gene Families AT5G25550 52.6 9.0e-41 165.2
Car05g01248 CCT,CST 57 416 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 3.4e-40 163.3
Car12g01214 CCT,CST 54 413 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.1e-38 158.3
Car10g00558 CCT 51 231 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 5.4e-38 156.0
Car06g01193 CST 23 356 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.6e-37 154.5
Car11g00470 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 70.7 3.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01193 Car_Chr06 FPKM 7.691141 9.032878 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0