Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01204 ATGGCACAGGGAAAGATGGTGATGACTCTGCTTGCTGTTATCGTTGCCGTTCACTGGGCAGGAGCAGCAGCACAGTCGGACTGTACGAATGTGCTGATCAGCTTGTCACCGTGCCTGAATTACATTACAGGGAACTCTTCTACCCCATCACAAGGATGCTGCACACAGCTTGCAACCGTTGTCCGCTCACAACCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGTTCCTCGCTTGGGGTCAACATCAACCAAACCCAGGCTCTAGCTCTGCCCCAGGCTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTTCTCCCACCGGCTCTCCAGCAGGATCACCGGAATCTTCAAACAATGTTCCTTCAGGAACTGGATCTAAGACTGTTCCATCACCAGACAACAACTCATCAGACGGAAGCTCCATCCATTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTACATATGCTTCAGCTTTCAAGTTGTACTGA 510 50.39 MAQGKMVMTLLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATVVRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNVASPTGSPAGSPESSNNVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8791629 8794088 + Carg06153-RA Car06g01204 150940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01204 169 Pfam Probable lipid transfer 15 105 IPR016140 -
Car06g01204 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Car06g01204 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 163 - -
Car06g01204 169 Gene3D - 25 109 IPR036312 -
Car06g01204 169 SMART aai_6 28 105 IPR016140 -
Car06g01204 169 MobiDBLite consensus disorder prediction 107 144 - -
Car06g01204 169 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Car06g01204 169 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Car06g01204 169 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Car06g01204 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 163 IPR043325 -
Car06g01204 169 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01204 - - - csv:101204822 293.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02959 Car-Chr4:22202399 Car06g01204 Car-Chr6:8791629 7.27E-21 dispersed
Car06g01204 Car-Chr6:8791629 Car19g00215 Car-Chr19:2101645 4.09E-21 dispersed
Car16g01002 Car-Chr16:8462252 Car06g01204 Car-Chr6:8791629 2.75E-07 dispersed
Car18g00640 Car-Chr18:7696378 Car06g01204 Car-Chr6:8791629 3.86E-12 dispersed
Car20g00028 Car-Chr20:163100 Car06g01204 Car-Chr6:8791629 2.68E-10 dispersed
Car14g00709 Car-Chr14:3949943 Car06g01204 Car-Chr6:8791629 8.53E-11 transposed
Car14g01554 Car-Chr14:12745765 Car06g01204 Car-Chr6:8791629 4.27E-106 wgd
Car17g00200 Car-Chr17:1192558 Car06g01204 Car-Chr6:8791629 1.15E-10 wgd
Car02g01540 Car-Chr2:9939572 Car06g01204 Car-Chr6:8791629 2.07E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01204 Car_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0