Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01210 ATGTACGCTGCCTGCAGAAGGATAATGGAAGCTCGCTTGGTGTTTGATAAAATGTCTCAGAGGGATGTCGTCACTTGGAGCATCATGATTGATGGGTATTGCATAAGTGGTTATTATGATCTCGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAGGCTTGGAACCAGATGAAATGATTCTTTCAACTATTCTTTCTGCTTGCGCCCGAGCTGGAAATTTGGATTTTGGAACAAAAGTACACGAGTTCATAACTAAGAAGAATATTGTCATGGATCCTCACTTACAAAGTGCTCTCATCAAGATGTATGCAAGTTGTGGCTCCACGGACTTGGCTTGGGATCTGTATGAAAAGATATCCCCTAAGAACATGGTTATTTCGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGACAGATTGGTGATGCTCGCTATGTGTTTGATCAAATGGTGGAGAAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATATACTGAGAGTGATTGCCCTCAAGAGGCTCTTGTACTGTTCAAGAAAATGCAACAACTGGGAATGAAACCTGATGTAGTCACCATGTTGAGTGTCATCTCAGCTTGTGCTCATCTTGGTGCATTAGATCAAGCCAAATGGATCCAAATTTATGTTGATAAAAATGGGTTCGGCAAGGCATTGTCTATCAATAATGCACTCATTGATATGTATGCCAAATGTGGGAGTCTAGAAGGAGCGAGAGAAATCTTTGGAAAGATGCCAAAGAAAAATGTTATATCTTGGACGAGTATGATTAATGCTCTTGCAATGCATGGAGATGCTCATACTGCCCTAAGTCTATTTCATCAAATGAAAGTTGAAAACGTTGAGCCTAATTGGATCACATTTGTGGGGTTGCTTTATGCTTGTAGCCATGGAGGTCTAGTTGAGGAGGGCCAAAGAATATTCCACTCGATGATCAATGAGTATGGCATAAATCCCAAGCACGAACATTTTGGTTGCATGGTTGACCTCTTTGGCCGTGCAAAATTGCTGAGAGAAGCTCTTGAGGTGGTAGAAGCAATGCCATTTGCTCCTAATGCTATTATTTGGGGATCCCTTATGGCTGCTTGTCAGCTCCATGGTGACACTGAGTTGGGAGAATTTGCTGCTAAACAAGTTCTCAAGCTCGAGCCAGATCACGATGGCGCCCTTGTTGTCTTATCAAACATATATGCTAAAGAAAGAAGATGGGAAGACGCTGGAGAGGTTAGAAAACTTATGAACGAGATGGGCGTTTCGAAAGAGAGAGGATGCAGTAGAATTGAATTGAACAATGAGGTGCATGAATTTCAAATGGCAGATAGAAAACACAAGCAAGCTGATCTAATATATCAAAAGTTAAATGAGGTAGTTCAAACGTTGAAGCTGGCTGGTTATACACCACAGACTAACTGTGTGCTCGTTGATTTAGACGACGAGGAAAAGAAGGAATTAGTCCTCTGGCACAGTGAGAAACTGGCATTGTGCTATGCCCTTATGAATGAAGGGTCACGCATTTGCATTATAAAGAACCTTCGGATTTGTGAGGATTGTCATGCTTTTATGAAACTAGCCTCAAAGGTGTATGCCAGAGAGATCGTCGTTCGGGACAGAACTCGGTTTCACCATTACAGAGACGGTTCGTGTTCTTGTAAAGACTACTGGTGA 1683 42.07 MYAACRRIMEARLVFDKMSQRDVVTWSIMIDGYCISGYYDLAFQLFEEMKRTGLEPDEMILSTILSACARAGNLDFGTKVHEFITKKNIVMDPHLQSALIKMYASCGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQMVEKDLICWSAMISGYTESDCPQEALVLFKKMQQLGMKPDVVTMLSVISACAHLGALDQAKWIQIYVDKNGFGKALSINNALIDMYAKCGSLEGAREIFGKMPKKNVISWTSMINALAMHGDAHTALSLFHQMKVENVEPNWITFVGLLYACSHGGLVEEGQRIFHSMINEYGINPKHEHFGCMVDLFGRAKLLREALEVVEAMPFAPNAIIWGSLMAACQLHGDTELGEFAAKQVLKLEPDHDGALVVLSNIYAKERRWEDAGEVRKLMNEMGVSKERGCSRIELNNEVHEFQMADRKHKQADLIYQKLNEVVQTLKLAGYTPQTNCVLVDLDDEEKKELVLWHSEKLALCYALMNEGSRICIIKNLRICEDCHAFMKLASKVYAREIVVRDRTRFHHYRDGSCSCKDYW 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8807890 8809793 - Carg17425-RA Car06g01210 150946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01210 560 Pfam PPR repeat 330 353 IPR002885 -
Car06g01210 560 Pfam PPR repeat family 254 301 IPR002885 -
Car06g01210 560 Pfam PPR repeat family 153 201 IPR002885 -
Car06g01210 560 Pfam PPR repeat family 21 70 IPR002885 -
Car06g01210 560 Pfam E motif 372 434 IPR046848 -
Car06g01210 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Car06g01210 560 Pfam DYW family of nucleic acid deaminases 470 560 IPR032867 GO:0008270
Car06g01210 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Car06g01210 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01210 - - - bhj:120088878 1069.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01210 Car-Chr6:8807890 Car14g00784 Car-Chr14:4548094 3.91E-09 dispersed
Car06g01210 Car-Chr6:8807890 Car14g01752 Car-Chr14:13798526 5.02E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01210 Car_Chr06 FPKM 0.0 0.0 0.0 0.0 1.269138 1.790098 1.397317 0.578945 0.387346 0.621593