Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01218 ATGTTCTTAAGGAGAGGATTTTCTTTAATTAGCCCTCACTTTGTATTGAGGGCCTGCGGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTAGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCACGCCTCAGCCATCTCCACTGTTTCCTGAGAGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATGCTTGGGCAGTTTCATTTGGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATATAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAAGGAAGATACGCAGCAAAACAAAAGCAAAGTCAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAATTGAAAGGGAGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCCCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGGCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGGGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAGTAAAGATTAAGCAGCAAAAGAGACCCAGAAAAGTTGGAAAGCCACCTTTAGCATAA 1008 41.07 MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPESKPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGHVKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKVKIKQQKRPRKVGKPPLA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8829391 8830398 - Carg17417-RA Car06g01218 150954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01218 335 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 224 315 IPR005484 GO:0003735|GO:0005840|GO:0006412
Car06g01218 335 Gene3D - 202 316 - -
Car06g01218 335 PANTHER EXPRESSED PROTEIN 46 327 - -
Car06g01218 335 MobiDBLite consensus disorder prediction 155 178 - -
Car06g01218 335 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 46 327 IPR005484 GO:0003735|GO:0005840|GO:0006412
Car06g01218 335 SUPERFAMILY Translational machinery components 205 314 - -
Car06g01218 335 CDD Ribosomal_L18_L5e 218 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01218 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01218 Car-Chr6:8829391 Car15g00004 Car-Chr15:28669 7.54E-25 dispersed
Car06g01218 Car-Chr6:8829391 Car04g02922 Car-Chr4:21951776 1.45E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g503 . . . . . . . . . . Cma06g01412 . Car06g01218 . . . . Bhi01g00816 . . . Hepe05g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01414 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01218 Car_Chr06 FPKM 10.509913 11.338713 2.31301 2.528377 3.357181 3.673722 3.733632 2.029357 1.843278 1.740536