Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01219 ATGGAAGCTACCATCGTCGATTCAGACAGTAGACCGACGATCATGATCACCAACGACGACGGAATCGATGCGCCCGGTATTCGCGCTTTGGTTCGTGTCCTCGTCTCCACTAAGCTGTATAATGTTCAAGTCTGCGCGCCTGATTCGGAAAAGTCAGCTGTTAGCCAGTCTATTACTTGGCGTCATCCTATTTCTGCTAAGAGAGTGGATATCGAAGGAACCACTTCTTATGCTGTTTCTGGAACTCCTGCTGATTGTACTTCTTTGGGAATATCTGGAACTCTCTTTCCGTCAAAACCAGATCTGGTAGTCAGTGGCATAAACATGGGTAGCAACTGTGGTTATCACGTTGTATATTCCGGAACAGTAGCTGGTGCTCGAGAAGCCTTTTTTAATGACATTCCTTCAGTTTCTTTATCTTATGACTGGTACGTATCATTAGTCTTTACTCATTTGACTTTTCTTGTCATGGAACTTCAGGGTTGGAGGAGCAATATAAATGACTACACACTTGCTGCTGAGGCTTGCTTGCCCATAATAAGTGCAATTTTAGCTGACGTCAAGGCTCAAACTTTTCCTCAAAATTGTTTCTTGAATATCGATTTTCCAACAGATATTGCTAATCATAGGGGATATAAATTAACCAAGCAAGGTCGATGCATGTACAAACTGGGTTGGAGAAGGGTTACTTCTGACTCTCCAGGAGGTAAAATGTTGTCAACTATGACTATGGAGCCAGCATCATCAGTGGAATGTAATACTTCGAATGAATCCGAGCTGTTTACGAGGCAGGTAATAAGTCCACCTGTTGATGATGAAGATACAGATTACAAATATCTACGAGAAGGCTATATTACTGTCACTCCTCTTGCTGCCCTGTCTCGTGCAGAGGTAGACTGCGAAAACATTTTGGAAGCTTGGTTGCTTGGTGTGGTTGCTCCGCCATCAGCTTCTGCTTTATAA 963 43.2 MEATIVDSDSRPTIMITNDDGIDAPGIRALVRVLVSTKLYNVQVCAPDSEKSAVSQSITWRHPISAKRVDIEGTTSYAVSGTPADCTSLGISGTLFPSKPDLVVSGINMGSNCGYHVVYSGTVAGAREAFFNDIPSVSLSYDWYVSLVFTHLTFLVMELQGWRSNINDYTLAAEACLPIISAILADVKAQTFPQNCFLNIDFPTDIANHRGYKLTKQGRCMYKLGWRRVTSDSPGGKMLSTMTMEPASSVECNTSNESELFTRQVISPPVDDEDTDYKYLREGYITVTPLAALSRAEVDCENILEAWLLGVVAPPSASAL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8832177 8837600 + Carg17416-RA Car06g01219 150955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01219 320 PANTHER OS07G0204500 PROTEIN 1 319 - -
Car06g01219 320 TIGRFAM surE: 5'/3'-nucleotidase SurE 13 291 IPR002828 GO:0016787
Car06g01219 320 PANTHER 5'-NUCLEOTIDASE SURE 1 319 IPR030048 GO:0008252
Car06g01219 320 Pfam Survival protein SurE 14 222 IPR002828 GO:0016787
Car06g01219 320 Gene3D - 3 309 IPR036523 GO:0016787
Car06g01219 320 SUPERFAMILY SurE-like 13 292 IPR036523 GO:0016787
Car06g01219 320 Hamap 5'/3'-nucleotidase SurE [surE]. 12 313 IPR030048 GO:0008252
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01219 K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] - csv:101206491 516.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01219 Car14g01539 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00044 Car-Chr1:231871 Car06g01219 Car-Chr6:8832177 2.13E-65 dispersed
Car06g01219 Car-Chr6:8832177 Car14g01109 Car-Chr14:9823752 4.12E-55 dispersed
Car14g01539 Car-Chr14:12692247 Car06g01219 Car-Chr6:8832177 3.82E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g491 . . . . . Bpe14g01185 . . . . Cma06g01413 Cma14g01704 Car06g01219 Car14g01539 Sed02g1242 Cpe08g00257 Cpe03g01432 Bhi01g00818 Tan10g0847 Cmetu06g1617 . Hepe05g1546 . Lcy11g1541 . . . . . . . . . . Cone4ag0241 Lsi05g01601 . . Cme06g00613 Blo02g00541 Blo07g00216 Bda11g00574 Bda13g00128 . Bpe13g00609 Bma02g00853 Bma06g01554 . Cmo06g01415 Cmo14g01747 . . . . . . . . . . . . . Cla05g00548 Cam05g0597 Cec05g0608 Cco05g0604 Clacu05g0594 Cmu05g0564 Cre05g0633 . Csa03g01334 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004917 2 1 3 2 2 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01219 Car_Chr06 FPKM 0.411636 0.586083 2.646221 2.788089 2.702576 2.198511 2.442514 2.499602 1.814638 2.292648
Car06g01219 Car_Chr00 FPKM 0.402811 0.479587 1.732089 2.073931 1.772635 2.049918 1.567576 1.891971 1.991214 1.806811