Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01226 CTCTCCTCTCTCTCCTTCTCCTTTCACTCGCCTTTTGATCAAGTCCCCAGATTTGGTTATCGGGATCACTCTCTTCCACGTCTCGTTATTCCAAGCTCCTCTGGTTGTTTGTTTATGGAGCTTCCGAAGCGCGTAGATCAGAATCTTCCAGAGAGGAAAGGCCACAAGCGGAAACTGGAGGAGGAATTTGAGGAAGAACGGGGGATCTCTGTTCCTACTGGGGATGCCAAGCGAGCGTTACTCAGCGAGGTCAGTGCTCAAGTTGAAATTCTCAATTCCACTTTTTCATGGAAGGAATCCGATCGAGCTGCTGCTAAGCGGGCTACTCATGTTCTTGCGGAGCTTGCTAAAAACGAAGAGGTAGTGAACGTGATTGTGGAAGGTGGAGCAGTGCCGGCTTTAGTTAAGCATTTACAAGCACCGCCTCTTGTTGAAGGTGATCGCAGTCTTAAGCCATTTGAACACGAGGTTGAGAAAGGAAGTGCTTTTGCGCTTGGACTGCTGGCTGTAAAGCCAGAGCACCAGCAACTGGTAGTTGACATTGGTGCTTTGTCACACCTTGTTGAGCTATTGAAGAGACACAAGGAAGGTTCTTCTCGAGCTGTAAATAGTGTTATTCGTAGAGCTGCAGATGCTATTACAAATCTTGCCCATGAGAATAGTTGCATTAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCTCTTGTTGAATTGCTTGAATTTACGGACACAAAGGTACAAAGAGCTGCTGCTGGGGCATTACGAACACTGGCCTTTAAGAATGATGAGAACAAAAATCAGATCGTTGAGTGCAATGCTCTCCCTACGCTCATTTTGATGCTTCGGTCAGAGGATGCTGCTATTCATTATGAAGCGGTTGGTGTTATTGGAAATCTGGTGCACTCATCCCCAAATATAAAGAGAGAAGTTCTCCATGCTGGAGCTTTGCAACCTGTTATTGGATTACTCAGTTCTTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTATTACTTGGACAATTTGCGGCAACTGATTCAGATTGTAAGATTCACATTGTACAGAGGGGTGCTGTTCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAGCTACGAGAAATGTCAGCTTTTGCATTGGGTAGATTGGCACAGGAAACTCATAATCAAGCGGGTATTGCTCATAATGGTGGTCTAATGCCATTACTGAAGCTTCTTGATTCGAAAAATGGTTCTTTGCAACATAATGCAGCATTTGCTCTTTATGGTCTTGCGGATAATGAGGATAATGTATCTGATTTTATTAGGGTGGGAGGAGTTCAGAAGCTGCAAGATGGAGAATTTATAGTGCAAGCAACGAAAGACTGTGTGGCAAAGACAGTCAAGAGATTGGAGGAGAAAATACATGGAAGGGTCTTGAATCACTTGTTACATCTAATGCGTGTAGCTGAGAAGGCTGTGCAAAGACGAGTGTCTCTTGCTCTTGCTCATCTTTGTTCACCCGATGATCAGAGGACCATATTTATCGATAATAATGGTCTGGAGTTGCTTCTTGGCCTGCTTGGTTCTTCAAGTCTCAAGCAGCAGCTTGATGGTGCTGTTGCTCTGTACAAGCTGGCAAATAAAGCCATGACTCTTTCTCCTGTTGATGCCGCTCCACCATCTCCAACACCACAGGTCTACCTTGGGGAGCAGTATGTGAACAATTCTACATTGTCTGATGTGACTTTTCTTGTTGAAGGAAGACGCTTCCATGCCCACAGAATTTGCTTGCTTGCTTCTTCAGATGCATTCCGTGCAATGTTTGATGGTGGCTATCGGGAAAAGGATGCAAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGATTTGTTTACACTGGATCTGTGGATGTTTCGTTGGATATTGCACAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATATACCATTGCACAGGATATATCATTGGAAAATGTTGCAAGCATGTACGAACTTTCAGAAGCCTTTAATGCCATATCTTTGAGGCACACGTGCATCCTTTTTATCTTGGAACAATTTGATAAACTCAGCGCAATGCCAGGGCACTCTCATCTAATTCAGCGCATACTTCCCGAGATCCGCAACTATTTTGCAAAAGCCCTGACCAAGCCTAACCTCCATGGCTCACGGTTGTAG 2226 44.61 LSSLSFSFHSPFDQVPRFGYRDHSLPRLVIPSSSGCLFMELPKRVDQNLPERKGHKRKLEEEFEEERGISVPTGDAKRALLSEVSAQVEILNSTFSWKESDRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPLVEGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLVVDIGALSHLVELLKRHKEGSSRAVNSVIRRAADAITNLAHENSCIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLHAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTVKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCSPDDQRTIFIDNNGLELLLGLLGSSSLKQQLDGAVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNSTLSDVTFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVASMYELSEAFNAISLRHTCILFILEQFDKLSAMPGHSHLIQRILPEIRNYFAKALTKPNLHGSRL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8878969 8885199 + Carg17409-RA Car06g01226 150962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01226 741 Pfam Armadillo/beta-catenin-like repeat 227 259 IPR000225 GO:0005515
Car06g01226 741 Pfam Armadillo/beta-catenin-like repeat 262 301 IPR000225 GO:0005515
Car06g01226 741 Pfam Armadillo/beta-catenin-like repeat 346 385 IPR000225 GO:0005515
Car06g01226 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Car06g01226 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Car06g01226 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 266 IPR000225 GO:0005515
Car06g01226 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 182 221 IPR000225 GO:0005515
Car06g01226 741 Pfam BTB/POZ domain 567 669 IPR000210 GO:0005515
Car06g01226 741 ProSiteProfiles BTB domain profile. 574 641 IPR000210 GO:0005515
Car06g01226 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01226 - - - cmax:111479276 1290.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01226 Car14g01525 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00364 Car-Chr3:4505572 Car06g01226 Car-Chr6:8878969 1.44E-06 dispersed
Car06g00826 Car-Chr6:6495769 Car06g01226 Car-Chr6:8878969 4.96E-06 dispersed
Car06g01226 Car-Chr6:8878969 Car06g01243 Car-Chr6:8974386 1.13E-18 dispersed
Car07g00618 Car-Chr7:3113882 Car06g01226 Car-Chr6:8878969 2.37E-06 dispersed
Car09g00049 Car-Chr9:248228 Car06g01226 Car-Chr6:8878969 1.21E-06 dispersed
Car14g01525 Car-Chr14:12524367 Car06g01226 Car-Chr6:8878969 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3743 PF00651 BTB 7.80E-26 CL0033 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01226 Car_Chr06 FPKM 37.542313 38.728985 19.369102 0.0 18.185333 23.103987 0.0 0.0 16.297251 0.0