Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01227 AGATTTTTTCCTTCTATCCTCTTCTCTCGTCTTCTTCCGTCACTCGCTGACATCCTCCGTTCATCTCCAGGAGACACAAATTTGGAATGTAGACCATTGTCGATCAAATTGTGGCCTCCTAGTGACAATACCCGGAATATGCTTGTGGAACGGATGACATCTAACCTTACCAGCAAATCCTTTTTCACCCAAAAGTATGGCACTCTTAGTCAGGAAGAGGCAACAGATGAGTCGAAGAGAATTGAAGACATTGCTTTTGCTACAGCTAATCAGAACTATGAAAACCACCCTGATGGTGATGGAAGTGCTGCTGTGCAACTTTATGCCAAGGAGTGTAGCAGGCTTCTTCTTGAGGTTCTTAAGAGAGGTCCTAGAGTCGAGGCAGACAAGGAGGAGGTTGGATCTGATATCGCTAGTGCTCCACGTGAAACCTTTTTCGACATCTCGAAAGGTCGACGGGAGTTTATTGAGGCGGAGGAAGCTGAAGAACTACTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCAAGATATGTTTTAGCAACAGAAGCTTTGGTTTAGAAGCAGCTCGTGTTACTGAGCCCATTCTTGTATCCCTCAAGGATCAGTTAAAAGAAGTGGACCTCTCTGATTTTATTGCAGGAAGAACAGAGTCAGAAGCTCTAGAAGTCATGAAATTGTTCTCAGATGCTTTAGAAGGCAGCATCTTGAGGTCTCTGAACCTCTCAAACAACGCCTTAGGTGAGAAAGGTGTTAGAGCTTTTGGCTCTCTCCTGAAATCACAGACTTGGTTGGAGGAGCTATACTTTATGAATGATGGCATTTCCAAGGAAGCTGCTCAGGCAGTGTCCGAGTTGATTCCTTCAACAGATAAGCTTAGAGTCCTTCAATTTCATAATAACATGACAGGCGATGAAGGTGCGCTCGCCATAGCTGAAATCGTGAAGCGTTCTCCTCTGTTGGAGGATTTCCAATGCTCCTCTTCAAGGATAGACTCAGAAGGGGGAGTTGCCTTATGTATAGCACTCGAGACTTGTACCAACTTGAAGAAACTCGATCTTCGAGACAACATGCTTGGAGTGGAAGGTGGACTTGCTCTGAGTAAATCCCTTGCATACCATGTAGATCTCAAGGAGTTGTATTTGAGCTACCTGAACTTGGAAGACGAAGGTGCAATTGCCATAGCTAATGCACTAAAGGACACAGCTCCTGCACTAGAAGTCTTGGAAATGGCTGGTAATGACATAACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCTCAAAAATCCCATCTTACCAGCTTGAATCTGGCCGAGAATGAACTGAAGGATGAAGGAACTATCCTGATCAGTAAGGCACTAGAAGGTCACATCAAAATAAAAGAAGTTGATATGAGTACTAACTTAATAAGGCGGGCAGGGGCTCGGGTTTTAGCTCAGACTATGGTTCAGAAGCCTGGTTTTGTGCTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGGTGAAAGATATTTTCAAGAAACATCCGGATATGCTTGGGCCCTTGGATGAAAATGATCCTGAGGGGGTAGATGACAATGAGGACGAGGACGAGGACGAGGATGAGGACAAGGATCCCGTAGCAGACGAGAACGATGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTCGATCAAGAGAACTAC 1710 44.5 RFFPSILFSRLLPSLADILRSSPGDTNLECRPLSIKLWPPSDNTRNMLVERMTSNLTSKSFFTQKYGTLSQEEATDESKRIEDIAFATANQNYENHPDGDGSAAVQLYAKECSRLLLEVLKRGPRVEADKEEVGSDIASAPRETFFDISKGRREFIEAEEAEELLKPLKEPGNSYTKICFSNRSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRTESEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQTWLEELYFMNDGISKEAAQAVSELIPSTDKLRVLQFHNNMTGDEGALAIAEIVKRSPLLEDFQCSSSRIDSEGGVALCIALETCTNLKKLDLRDNMLGVEGGLALSKSLAYHVDLKELYLSYLNLEDEGAIAIANALKDTAPALEVLEMAGNDITAEAASALAACIAQKSHLTSLNLAENELKDEGTILISKALEGHIKIKEVDMSTNLIRRAGARVLAQTMVQKPGFVLLNINGNFISDEGIDEVKDIFKKHPDMLGPLDENDPEGVDDNEDEDEDEDEDKDPVADENDEDELGSKLKNLEVDQENY 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8886448 8888870 + Carg17408-RA Car06g01227 150963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01227 570 MobiDBLite consensus disorder prediction 524 552 - -
Car06g01227 570 Pfam Leucine Rich repeat 345 368 IPR001611 GO:0005515
Car06g01227 570 Pfam Leucine Rich repeat 431 448 IPR001611 GO:0005515
Car06g01227 570 Pfam Leucine Rich repeat 377 396 IPR001611 GO:0005515
Car06g01227 570 Pfam Leucine Rich repeat 237 255 IPR001611 GO:0005515
Car06g01227 570 Pfam Leucine Rich repeat 406 425 IPR001611 GO:0005515
Car06g01227 570 MobiDBLite consensus disorder prediction 516 570 - -
Car06g01227 570 MobiDBLite consensus disorder prediction 553 570 - -
Car06g01227 570 Pfam WPP domain 34 129 IPR025265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01227 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 835.099
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01227 Car14g01523 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01227 Car-Chr6:8886448 Car08g00279 Car-Chr8:1762377 0 dispersed
Car05g00802 Car-Chr5:7324938 Car06g01227 Car-Chr6:8886448 2.69E-14 transposed
Car14g01523 Car-Chr14:12521044 Car06g01227 Car-Chr6:8886448 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01227 Car_Chr06 FPKM 58.922012 60.549335 43.451077 43.029434 59.085316 72.564209 61.278282 51.794441 52.357456 48.273613
Car06g01227 Car_Chr00 FPKM 81.362762 62.708973 69.622818 57.782444 96.401794 84.605431 95.278023 73.04937 106.73069 83.597275
Car06g01227 Car_Chr00 FPKM 58.936028 60.634747 52.267742 51.797291 74.74321 85.669121 73.915451 64.051659 66.538597 61.389168