Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01234 ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATTGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGTGGTTGGCGATGGATTTGAAAATGGAGTTGATGTTGGAGCTTGTTGTAACTCGTCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAAGTTTACTTATGCCAATGA 549 44.44 MAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVVVGDGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQVYLCQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8927838 8929220 + Carg17401-RA Car06g01234 150970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01234 182 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Car06g01234 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01234 Car-Chr6:8927838 Car14g01693 Car-Chr14:13466480 2.36E-51 dispersed
Car06g01234 Car-Chr6:8927838 Car12g00206 Car-Chr12:1299052 5.65E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3744 PF00010 HLH 8.20E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01234 - - csv:101203445 305.449