Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01235 ATGAGTAAAGAAGAGTTTCTGAAGATCCAGAAATGTGTGTTGAAGGTCAATATTCACTGCGATGGATGTAAGCATAAGGTGAAGAAAATCTTGCAGAAAATCGATGGGGTTTTCACTACCGAGATAGATGCAGAACAGGGGAAGGTTACAGTCACTGGAAATGTCGACGCCGCCGTACTCATGAAGAAGCTGGCTAAATCCGGCAAACATGCAGAGATTTGGGGCGGACAACCGGCGAACAACAACAAGAATCAGCAGAACAACATTGCTAATCAGATGAAAAACATGCAAATTGACAATGCTAAAGGTGGGAACAACAAGGGTCAGAACCAGAAGGGTGCGGCTGCTAATGGAGGAAACAACCAGCCGAAAGGCGGCGGACAGGGACAGGGGCTGCCACCGGTGCAGGTGCAGCTTCAGCAGCTACAACAGATGAAAGGGTTTCAAGATCTGAAGCTCCCACCCCAATTTAAGGGGTTGAAACTGCCTGTTAAAGATCAAAACGTGAATCTTCCCAAGGGTGGGAAGTTTAATTTGCACGAAGGTGATGACCTCAGCGATGAGGATGAGGACGAGTATGAGGATGAGGAGGATTATGATGATGAAGATGAACTTGATGATGATTTGGGTAATCTTCATCTCCCTCCTGCGAGTAAGATGAAACCCATGATGGGGAATGGCCAGATTCCGAAAATGATGATGAATGGGAACCTTCCACCGGTTGTGAATGGTCCGGCCGGCGGTGGTAATGCCAAGAAAGGCGGCGGAGCTGTGCCGGTTCAGGGTAATAACAATGGGAAGAATGGTAACGGCGGAGGCGGTAAAGGAAATGGTGGCGGCGGTGGTGGAGGTGGAAGTAACCAAAAGCAGGGCGGTGGAGGTGGGAGTAACCAAAAGCAGGGCGGCGGCGGCGGAGGTGGGAGCAATGGCAAAAACGGCAACGGCGGTGGAAATGGGAGTAGTAACGGGGTGAACGGCGGTCAAAAGGTGACCGGTGGGGCAAACGGAATGGGCCATGATTTACAAAGCTTCATCGGTGCTCATGGATTGGGAATGTCAAATTTGGGTCAAATGGGTGACCGGCCAATGGGTCAAATGAACAATCTTCCAGCGGTGCAAGGTCTTCCCGCATCAGCGGCGGCAGCCATGAACGGTGGAGGCAGCGCCGGGAGGTTTATGCCGGACAGCATCTCCACAAACCCCTACCAACAACAACAGCAGCAGCAGCAGCAACAGCAACAGCAACAACAATACATGGCCCAAATGATGAACCAACAACAACACGCGCTTGGGCACCAACCAATGATGTACGCACGGCCACCGCCGGCCGTAAATTACGTGCCACCGCCGTACCCATACCCCTATCCATACCCACCACCGTACCACCACCACCCATATCCGCCGCCCCAGCAGCAGCCAGAACCCTACACGTATTTCAGCGACGAGAATCCGTCAAGTTGTAACATCATGTGA 1473 51.87 MSKEEFLKIQKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLMKKLAKSGKHAEIWGGQPANNNKNQQNNIANQMKNMQIDNAKGGNNKGQNQKGAAANGGNNQPKGGGQGQGLPPVQVQLQQLQQMKGFQDLKLPPQFKGLKLPVKDQNVNLPKGGKFNLHEGDDLSDEDEDEYEDEEDYDDEDELDDDLGNLHLPPASKMKPMMGNGQIPKMMMNGNLPPVVNGPAGGGNAKKGGGAVPVQGNNNGKNGNGGGGKGNGGGGGGGGSNQKQGGGGGSNQKQGGGGGGGSNGKNGNGGGNGSSNGVNGGQKVTGGANGMGHDLQSFIGAHGLGMSNLGQMGDRPMGQMNNLPAVQGLPASAAAAMNGGGSAGRFMPDSISTNPYQQQQQQQQQQQQQQQYMAQMMNQQQHALGHQPMMYARPPPAVNYVPPPYPYPYPYPPPYHHHPYPPPQQQPEPYTYFSDENPSSCNIM 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8935841 8937784 - Carg17400-RA Car06g01235 150971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01235 490 Pfam Heavy-metal-associated domain 14 69 IPR006121 GO:0046872
Car06g01235 490 MobiDBLite consensus disorder prediction 184 208 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 169 337 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 98 133 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 457 474 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 457 490 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 475 490 - -
Car06g01235 490 ProSiteProfiles Heavy-metal-associated domain profile. 17 73 IPR006121 GO:0046872
Car06g01235 490 MobiDBLite consensus disorder prediction 390 426 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 393 426 - -
Car06g01235 490 MobiDBLite consensus disorder prediction 289 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01235 - - - csv:101203695 301.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01235 Car17g00244 CCT
Car06g01235 Car08g01046 CCT
Car06g01235 Car17g00244 ECH
Car06g01235 Car08g01046 ECH
Car06g01235 Car14g01511 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01235 Car-Chr6:8935841 Car10g00932 Car-Chr10:7297748 3.76E-33 dispersed
Car01g00320 Car-Chr1:1812668 Car06g01235 Car-Chr6:8935841 1.19E-17 transposed
Car16g00937 Car-Chr16:7691317 Car06g01235 Car-Chr6:8935841 2.81E-14 transposed
Car14g01511 Car-Chr14:12468106 Car06g01235 Car-Chr6:8935841 5.21E-91 wgd
Car17g00244 Car-Chr17:1500417 Car06g01235 Car-Chr6:8935841 6.67E-43 wgd
Car06g01235 Car-Chr6:8935841 Car08g01046 Car-Chr8:7150639 3.57E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g432 . . . Bda08g00392 . Bpe14g01320 . Bma05g00945 Cmo08g01141 Cmo17g00256 Cma06g01433 Cma14g01677 Car06g01235 Car14g01511 Sed02g1273 . . Bhi01g00858 Tan10g0886 Cmetu11g1818 Lac12g2329 Hepe05g1523 . Lcy11g1507 Cla06g00546 Cam06g0589 Cec06g0586 Cco06g0594 Clacu06g0576 Cmu06g0570 Cre06g1336 Cone14ag0822 . Cone7ag0216 Cone4ag0208 Lsi05g01455 . Chy11g01430 Cme06g00645 . . Bda11g00561 . . Bpe13g00622 . Bma06g01540 . Cmo06g01436 Cmo14g01722 Cma08g01168 Cma17g00269 Car08g01046 Car17g00244 . . Bhi12g01804 . . . . . . Cla05g00578 Cam05g0634 Cec05g0644 Cco05g0639 Clacu05g0630 Cmu05g0598 Cre05g0666 Lsi09g01356 Csa03g01371 Chy06g00615 Cme11g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000577 6 3 3 5 3 3 6 3 3 3 3 2 6 3 3 6 2 4 1 3 4 3 3 3 3 3 4 5 3 3 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01235 Car_Chr06 FPKM 2.007156 2.12732 2.896547 3.131581 2.736359 2.848683 3.239058 3.766531 2.965987 3.45382