Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01240 ATGAATCTCTCACTTTCATCTTCCTCTTCTTCTTCACTTCCTTCCGCTTCTGCATCTTCTTCTTCTTCCTCCCCCTCTTCGTCTTCCACTACTTCATGGTTCTCCGGCATAGTTCGCGGCCGTCCCGATAGGTCTTCGAGCGTGAAAATGTCTGGCAGCTCTGCCTCTGGCTTTGCTGCTGGGGATCCCCCTGGCCCTGTTGTGAGGAAGAATCATTTTCGTGGGTTGCTCTTCAAGTACGGTCCCAAGCCAATTCAGCAAGTCATATTCATTGGTGGATTGACTGATGGCTTTATGGCAACAGAATACTTGGAACCTCTTGCAATTGCTTTGGATAAAGAAAAATGGTCACTTGTTCAGATTCTTCTATCATCATCATACAGTGGATATGGTACCTCCAGCTTGCAACAAGATGCCAAGGAGCTTGATCAGCTAGTAAGCTATCTGATCAATAAAGAAGACTCCGAGGGTGTCGTGTTACTTGGACATAGTACTGGCTGTCAGGACATAGTCTATTATATGCGTACAAATGCAGCTTGCTCTCGAGCAGTTCGTGGTGCCATTTTGCAGGCTCCGGTTAGTGATCGAGAGTATAGAGCAACTCTTCCTGAAACAGCAGCCATGATCGACTTGGCTTCGACTATGATAAACGAAGGCAGAGGATTAGATCTTATGCCAAGGGAGGCAGACCCGTCTCCGATAACCGCCACTCGATTGTGCAAAGCAATGGGAGGTGCAGAGAAAGTTGAGATTCAACATGGGAATCATTCTCTGTCAAACAGAGTTAATGAAGCAGTTGATGCCATAATTGACTTCGTGAAAAGGGAGGGTCCTAAGGGGTGGGATGATCCATGGCATTAG 861 46.92 MNLSLSSSSSSSLPSASASSSSSSPSSSSTTSWFSGIVRGRPDRSSSVKMSGSSASGFAAGDPPGPVVRKNHFRGLLFKYGPKPIQQVIFIGGLTDGFMATEYLEPLAIALDKEKWSLVQILLSSSYSGYGTSSLQQDAKELDQLVSYLINKEDSEGVVLLGHSTGCQDIVYYMRTNAACSRAVRGAILQAPVSDREYRATLPETAAMIDLASTMINEGRGLDLMPREADPSPITATRLCKAMGGAEKVEIQHGNHSLSNRVNEAVDAIIDFVKREGPKGWDDPWH 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8956170 8961308 - Carg17395-RA Car06g01240 150976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01240 286 MobiDBLite consensus disorder prediction 1 36 - -
Car06g01240 286 MobiDBLite consensus disorder prediction 1 63 - -
Car06g01240 286 Pfam Protein of unknown function (DUF1749) 86 239 IPR013744 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01240 - - - csv:101211227 390.193
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01240 Car14g01508 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01508 Car-Chr14:12453530 Car06g01240 Car-Chr6:8956170 1.17E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g428 . . . . . . . . . . Cma06g01438 Cma14g01674 Car06g01240 Car14g01508 Sed02g1276 Cpe08g00237 Cpe03g01413 Bhi01g00863 Tan10g0895 Cmetu06g0203 . Hepe05g1518 . Lcy11g1502 . . . . . . . . . Cone7ag0212 Cone4ag0203 Lsi05g01460 . . Cme06g00650 . Blo07g00205 Bda11g00558 . . Bpe13g00625 . . . Cmo06g01440 Cmo14g01719 . . . . . . . . . . . . . Cla05g00582 Cam05g0640 Cec05g0649 Cco05g0644 Clacu05g0634 Cmu05g0602 Cre05g0671 . Csa03g01376 Chy06g00619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008855 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01240 Car_Chr06 FPKM 23.14921 27.358818 26.596846 28.843346 20.25178 17.972931 20.229496 14.944868 13.625814 15.03038