Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01250 ATGGGGTTCGAAAGCTATGTCGTCGTACATAACATAGCCAAAAGGCACAACGTTGGCACATTGGCCCGAAGCGCCACCGCGTTCGGTGTATCGGAGGTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTCGGTAGCCATGGTTCCACTTCTCACGTCCGGTTCCGTCATTTTCATTCCCTTCTCGACGCCCGAAATTTCCTTCAGGAGAAGGACTGTGATATATGTGGCGTGGAGATCACTGATAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTCGGCAACGAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGCGACTTCTTCATTTACATCCCACAATATGGTGTCGGCACCGCTTCTTTGAATGTCACTGTAGCTGCTTCAATTGTCCTACATCATTTTGGTGTTTGGGCAGGCTTTCCCGAACGATGTCGTGATGGTAACAAGTTTATAGTGGCCGAAAGACCAGTAAAGCAAGGCAAGCGGAATTATTGCCCTGAAACAGAAGAATCTATTGTTGAAGAGCGAAAGTCCAGGCGGGATAATGCTTCGAAAGGCTTCTTTGACGAGGGAACGATCGATGATTCGACATCCAACCTTCTCGATACATTGTTTATTAACGAATGA 657 48.86 MGFESYVVVHNIAKRHNVGTLARSATAFGVSEVILVGRRDFNAFGSHGSTSHVRFRHFHSLLDARNFLQEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTVAASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQGKRNYCPETEESIVEERKSRRDNASKGFFDEGTIDDSTSNLLDTLFINE 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9002492 9006665 + Carg17385-RA Car06g01250 150986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01250 218 Pfam SpoU rRNA Methylase family 6 142 IPR001537 GO:0003723|GO:0006396|GO:0008173
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01250 - - - cpep:111799908 446.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01250 Car-Chr6:9002492 Car05g00989 Car-Chr5:9414030 2.06E-06 dispersed
Car11g00970 Car-Chr11:6414984 Car06g01250 Car-Chr6:9002492 1.33E-06 transposed
Car12g01258 Car-Chr12:11839217 Car06g01250 Car-Chr6:9002492 3.04E-07 transposed
Car14g01492 Car-Chr14:12370159 Car06g01250 Car-Chr6:9002492 1.10E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g396 . . . . . Bpe14g01162 . . . . Cma06g01447 . Car06g01250 . Sed02g1294 Cpe08g00227 . Bhi01g00892 Tan10g0918 Cmetu06g1283 . Hepe05g1500 . . . . . . . . . . . Cone7ag0193 Cone4ag0186 Lsi05g01478 . . Cme06g00669 Blo02g00565 . . . . . . . . Cmo06g01449 . . . . . . . . . . . . . . Cla05g00598 Cam05g0658 Cec05g0665 Cco05g0662 Clacu05g0651 Cmu05g0620 Cre05g0689 . Csa03g01394 Chy06g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013225 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 0 1 0 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01250 Car_Chr06 FPKM 25.116344 23.136242 65.598572 60.918785 27.046263 28.960081 29.085119 65.13797 62.471138 71.954758
Car06g01250 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.426353 0.0 0.0