Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01253 ATGGCGAAATTTTGTAGTTGCAATCTGCTGTTTATCCTCTCGATATCGATCTCGTTGCTTCTCCGGCGAGCTTCAAGCTCTTATGCAGGTTCCGCTAGCTCAATCGTCAATCCTGCAAAAGTCAAACAGATTTCATGGAGTCCCCGGGCTTTCGTGTATGAAGGTTTTCTCACGGACTTAGAATGCGATCATCTCATCTCGCTTGCTAAAGCGGAGTTGAAGAGATCTGCTGTTGCGGATCATTTGTCTGGAGAGAGCAAGGTCAGCGAGGTCCGAACTAGCTCTGGGGCATTTATTCATAAAGCCAAGGATCCGATCGTTTCTGGTATTGAAGACAAAATTGCAGCATGGACATTCCTGCCAAAAGGAAGATATATCTGTCTCTACTTATTGACTTACTTCATCAAATCCGCTGAATCTCAAAGACGGCAGGCTTCTGAAACAAATGAAGATCTCTCAGACTGTGCAAAGAAAGGGATAGCAGTGAAACCACGGAAGGGTGATGCTCTTCTCTTCTTCAGTCTTCATCCAAATGCTGTTCCAGACACAAAAAGTCTGCATGGAGGTTGCCCTGTGATTGAAGGAGAGAAATGGTCAGCAACAAAGTGGATCCATGTCGATTCTTTCGACATGATCGTGAGTGATCATACGAGTTGCGTTGATAATAATGCAAGTTGTGAGAGATGGGCTGAACTCGGCGAGTGCACGAATAACCCGGAGTATATGGTGGGATCTCCTGAGCTTCCTGGCTATTGCAGGAAAAGTTGCAAGGTTTGTTGA 780 45.51 MAKFCSCNLLFILSISISLLLRRASSSYAGSASSIVNPAKVKQISWSPRAFVYEGFLTDLECDHLISLAKAELKRSAVADHLSGESKVSEVRTSSGAFIHKAKDPIVSGIEDKIAAWTFLPKGRYICLYLLTYFIKSAESQRRQASETNEDLSDCAKKGIAVKPRKGDALLFFSLHPNAVPDTKSLHGGCPVIEGEKWSATKWIHVDSFDMIVSDHTSCVDNNASCERWAELGECTNNPEYMVGSPELPGYCRKSCKVC 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9013375 9016161 + Carg17382-RA Car06g01253 150989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01253 259 Pfam 2OG-Fe(II) oxygenase superfamily 153 205 IPR044862 -
Car06g01253 259 ProSiteProfiles ShKT domain profile. 219 259 IPR003582 -
Car06g01253 259 Coils Coil 135 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01253 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - csv:101215570 409.838
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01253 Car17g00267 CCT
Car06g01253 Car08g01068 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01253 Car-Chr6:9013375 Car15g00286 Car-Chr15:1548260 1.37E-84 dispersed
Car14g01489 Car-Chr14:12358826 Car06g01253 Car-Chr6:9013375 4.47E-85 wgd
Car17g00267 Car-Chr17:1652000 Car06g01253 Car-Chr6:9013375 1.35E-115 wgd
Car06g01253 Car-Chr6:9013375 Car08g01068 Car-Chr8:7285977 1.21E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g389 . . . . . Bpe14g01160 . . Cmo08g01163 Cmo17g00279 Cma06g01451 Cma14g01654 Car06g01253 . . Cpe08g00224 Cpe03g01399 Bhi01g00918 . . . . . . Cla06g00523 Cam06g0562 Cec06g0562 Cco06g0569 Clacu06g0550 Cmu06g0546 Cre06g1315 Cone14ag0801 Cone15ag0800 . . Lsi05g01486 . Chy11g01452 Cme06g00675 Blo02g00567 Blo07g00195 Bda11g00550 . . Bpe13g00639 . . . Cmo06g01452 Cmo14g01700 Cma08g01191 Cma17g00291 Car08g01068 Car17g00267 Cpe12g00243 Cpe17g00107 Bhi12g01764 . . . . . . . . . . . . . . Csa03g01400 Chy06g00643 Cme11g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01253 Car_Chr06 FPKM 59.070026 60.161133 68.528992 74.343414 38.193039 38.925678 38.151764 23.30117 23.030401 23.977453
Car06g01253 Car_Chr00 FPKM 18.179667 11.599935 15.953122 8.029403 0.0 7.688941 8.800873 2.219368 0.214682 0.0