Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01257 ATGGAGCATCCTCCTCCCTCGCCGCGGCCGGAGCCCTTATACGGTGCCGCCGCCGGAATGGACCTCCAACTTCCCATCGCTGATGACTCCTCCGCCGTCCTCTGGGACTTGGGGGATCTCCTCGACTTTGCTGGTGATGATCAGTTTTCTCTCCCTTTGGAACATGACAATCTGCCCTCGGACTCCTCTCATCCACTCGAGATTCCATCCGAGACTCTCCCTTCGAATTCTGACCGGATTCGGAAGCGTGACCCGAGGTTGACTTGCCCCAATTTCTTGGCCGGGCGGGTGCCTTGTGCTTGTCCTGAGATTGATGCGATGCTTGAGGAGGAAGCCGCCGCGTCTGGGAAGAAGCGGGCTAGGACGGCGCGTGTTGCGGCTGGAACTGCTCGGTGTCAGGTGTTCGGGTGTGAGGTCGATATTAGCGAGCTTAAAGGTTATCATAGAAGGCATAGGGTTTGTCTTCGATGCGCGAATGCTACTGCTGTTGCGATAGATGGAGAGACTAAAAGATATTGCCAGCAGTGTGGCAAGTTTCATCTTTTATCTGATTTTGATGAAGGCAAGCGGAGTTGTCGAAGAAAATTGGAGCGTCACAACAATCGACGACGTAGGAAGCCAGCTGATTCCACAGTTGCTATGGAAAGTGATCGAGCAGGCATGCATCTTGAAGATGTTTCTTGCGATGGTGATGCAGGGAAAGATGATATTGTTTTCAATAACCAAACTGTTCAAAAGGAGGTGGTGCATTTGGAGTCTGAAGATGGGATGGTTACCCCCACTGTATGTTCAGCTCCCGACCTGCAGAGCAATATTGAGAGCGGGTTAACTTTTATGGCAATGGGTGAAGCTCAAGTGGATGGAGGAAAAGATAATTTCAAATCTCTTGCTTCATCCTACTGCGACAATAAAAGCACATATTCATCAATGTGTCCAACAGGCCGAATATCATTCAAGCTTTATGATTGGAATCCTGCAGAGTTCCCTAGAAGACTTCGGCTCCAAATATTTGAATGGTTGGCTAATATGCCTGTTGAGTTGGAGGGATATATTCGGCCTGGTTGCGTAATTCTGACTGCATTTGTTGCAATGCCAAAGTTTATGTGGATAAAGTTACTTGAAGATCCTACGACACACGTGCACAATTTTGTAGTTGCACGTGGAAGACCGCTTTGGGGGAGGGGCAGCTTGCTTGTTTATTTGAACAACATGATTTTTTGCGCAGTGGAAGGGGGTAGTGTAATGAAAATTGAGATGGATACGCAGGCTCCCAGACTTCACTATGTACATCCTACATGCTTTGAGGCTGGAAAACCCATGGAGTTTGTTGCTTGTGGAAGTCATTTGCAACAACCAAAATTTAGGTCACTTGTATCTTTTGATGGCAAGTATCTGGCACACGTTCAATCTTTTGTTATTCCCCATTGTCAAAAAGAAGGTGATACTAAGCAGAGCAACCACCAAGTGTTCAAGATATGCATACCTCACACTGAAGATGATCTTTTTGGCCCTGCATTTGTTGAGGTGGAGAATCAGTCAGGCTTGTCAAATTTTATTCCTATACTCATCGGGGATAGTGAAACTTGTTCTGAAATGAAAACTATACAGGAGCGGCTTGATATGTCTCTGCCTGTGGAAGCTACTGGTTCATCACACAAATATTGCGAACATTCTTCATTGAGACAAAAAGTATATTCAGAACTCGTGACGGACATATCTTGGTTGCTTAAGAAGCCTTCATCGGAGCCTCTGCAGTGTATTATGAATTCGTCACAGATTCAAAGATTCACACGTTTGTTGAAATTTTTGATATCCATCGACTCAACTGTCATTTTAGGGAGAGTCTTAGAACATCTTAAGATTGTCATGGGAAATGTAGAATCAAATGTGGCTGCTAATGGCTTCAGTTACCCCGATTTAAGGTATTTTGAGAAGTATTTGGATTATGCAACAGTTGTTCTTCAACTGAATCTTCGAAGGGACCGGGTTTCTCGAAGCTTCTCCAAGAAAAAATTGGCTTCAGTTGATCCTGGGACTGGACTGAAAATGGAGTCCGGAGAAAGTGACCATTTTCGAGCAGCGTCTGGTTCAACTTCCACCAGTAGTGTGGAAACACGACCCCTTTTGAACGAAAAGCTCCGGGAAAAGATCATGGTTCAAGAAAATTCAAGAAAGTCATGTGGTCTTCTATTCTCAGGGACTGTTTTTAGGCGCCAGACTGCTCTATTTGCAATCACCTTCGCTGCAGTTTGTTTAGGAATATGTGCAGCTTTAGTTCATTCTCACAAGGTTGGCGAGTTTGCTGTTTCAATCCGCAGGTGCGTAATCAATACTTGA 2337 45.44 MEHPPPSPRPEPLYGAAAGMDLQLPIADDSSAVLWDLGDLLDFAGDDQFSLPLEHDNLPSDSSHPLEIPSETLPSNSDRIRKRDPRLTCPNFLAGRVPCACPEIDAMLEEEAAASGKKRARTARVAAGTARCQVFGCEVDISELKGYHRRHRVCLRCANATAVAIDGETKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKPADSTVAMESDRAGMHLEDVSCDGDAGKDDIVFNNQTVQKEVVHLESEDGMVTPTVCSAPDLQSNIESGLTFMAMGEAQVDGGKDNFKSLASSYCDNKSTYSSMCPTGRISFKLYDWNPAEFPRRLRLQIFEWLANMPVELEGYIRPGCVILTAFVAMPKFMWIKLLEDPTTHVHNFVVARGRPLWGRGSLLVYLNNMIFCAVEGGSVMKIEMDTQAPRLHYVHPTCFEAGKPMEFVACGSHLQQPKFRSLVSFDGKYLAHVQSFVIPHCQKEGDTKQSNHQVFKICIPHTEDDLFGPAFVEVENQSGLSNFIPILIGDSETCSEMKTIQERLDMSLPVEATGSSHKYCEHSSLRQKVYSELVTDISWLLKKPSSEPLQCIMNSSQIQRFTRLLKFLISIDSTVILGRVLEHLKIVMGNVESNVAANGFSYPDLRYFEKYLDYATVVLQLNLRRDRVSRSFSKKKLASVDPGTGLKMESGESDHFRAASGSTSTSSVETRPLLNEKLREKIMVQENSRKSCGLLFSGTVFRRQTALFAITFAAVCLGICAALVHSHKVGEFAVSIRRCVINT 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9023511 9028739 - Carg17378-RA Car06g01257 150993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01257 778 ProSiteProfiles Zinc finger SBP-type profile. 129 206 IPR004333 GO:0003677
Car06g01257 778 Pfam SBP domain 132 206 IPR004333 GO:0003677
Car06g01257 778 MobiDBLite consensus disorder prediction 196 216 - -
Car06g01257 778 MobiDBLite consensus disorder prediction 52 82 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01257 Car14g01485 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01257 Car-Chr6:9023511 Car01g01616 Car-Chr1:13252764 1.47E-19 dispersed
Car14g01486 Car-Chr14:12333231 Car06g01257 Car-Chr6:9023511 0 transposed
Car14g01485 Car-Chr14:12330882 Car06g01257 Car-Chr6:9023511 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3747 PF03110 SBP 6.40E-27 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01257 - - csv:101205874 1254.58