Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01262 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTGATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGATTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCACATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTACACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACTTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTAAGATCTAACTTTTTAGGAACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGAAGAATGCATTGCGTCATGGATGCTATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCTCGAGCCGTATAGACTTTCTTCCATCGATGAGATTTTCCTGGTCGAAATCGAATGAACCAAATCACACCGACGATCAATCATCAGGATCTTCATCCAATCAGAAAGATGGACTTCTGGTGCTCAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTTCACGGCCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGGTATCCAATCTCAGCGTTTCAGGCCTTCGCCATCTGCCTCAGCAGCTTCGACACAAAGATCGCTTGTGAATGA 1161 47.29 MSLKSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWVHMPQELLREVLIRIESSENDWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLTLADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSSSRIDFLPSMRFSWSKSNEPNHTDDQSSGSSSNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9073124 9077015 + Carg17371-RA Car06g01262 150998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01262 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Car06g01262 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Car06g01262 386 MobiDBLite consensus disorder prediction 272 292 - -
Car06g01262 386 Pfam Tub family 96 381 IPR000007 -
Car06g01262 386 Pfam F-box domain 37 82 IPR001810 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01262 Car08g01080 CCT
Car06g01262 Car08g01080 ECH
Car06g01262 Car14g01476 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01262 Car-Chr6:9073124 Car16g00326 Car-Chr16:2007663 1.41E-148 dispersed
Car14g01476 Car-Chr14:12260396 Car06g01262 Car-Chr6:9073124 0 wgd
Car17g00282 Car-Chr17:1737428 Car06g01262 Car-Chr6:9073124 3.61E-37 wgd
Car06g01262 Car-Chr6:9073124 Car08g01080 Car-Chr8:7360312 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3749 PF01167 Tub 3.20E-109 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01262 K19600 - csv:101217713 728.013