Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01271 ATGGGTGGTTGTTTTCCTTGTTTTGGATCCTCCGATCGCAATGGCGCAAAGGAAGCTACTAAGAAGGATTCAGCTAAGGATGGCGCCACTGCTCAGTCTCATCGTGTTAGCAGAGTGAGCTCAGATAAATCGAAGACATGGAGTGTATCTGATGCTAAGAACGAACCAACTGTTCAAAAGGATGGAACAACGGCACATATTGCAGCTCAAACGTTTACGTTTCGGGAGCTTGCTACAGCGACAAAGAACTTTAGACCTGAATGCTTATTGGGAGAAGGGGGGTTTGGACGAGTTTACAAGGGCCGCTTGGAGAGCACGGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTCCAAGGAAATCGGGAGTTTTTGGTTGAAGTTCTAATGCTTAGCCTGTTACATCACCCAAATCTTGTTAACTTGATAGGCTATTGTGCTGATGGCGATCAACGGCTTCTTGTTTATGAGTTCATGCCATTGGGGTCGTTGGAAGATCATTTACATGATTTTCCACCAGATAAGGAGCCCTTGAATTGGAATACTAGAATGAAGATCGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCGAACCCGCCTGTTATATATCGGGACTTGAAGTCGTCCAATATTCTTCTAGACGAGGGCTACCATCCCAAGCTGTCAGATTTCGGTCTTGCGAAACTAGGTCCAGTTGGTGATAAGACTCACGTCTCGACGAGAGTAATGGGAACATATGGCTACTGTGCTCCAGAATATGCTATGACTGGTCAACTCACTCTCAAGTCGGATGTATATAGTTTTGGAGTCGTCTTTCTTGAACTTATCACAGGGCGCAAGGCGATCGATAATACCAGAGGTCCGGGAGAGCATAATCTTGTAGCGTGGGCTCGGCCACTTTTTAAAGATCGTCGAAAGTTCCCTAAGATGGCTGATCCGCTGCTGCAAGGTCGTTATCCCACGCGGGGGCTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAAGAGCAGGCTGCTACTCGACCTCTAATCGGGGACGTAGTTACTGCTCTGACGTATTTAGCCTCGCAAACTTATGATCCTAATACAGCTGCTTCTCAAAGCAATCGAATGAGTGGTACTACTCCACGATCCCGAGATGAGCGGAGAGGCTTGCCAGATGGATTGGATAGCCCTGATGAGCGTGGCCGTGGACGTTCCCCGTCAAACTACAGAAACTCTGGAGGTACCGAGCTAAGCAGAATTGACACGGGAGGCGGGTCTGGTCGAAAATGGGAATTGGATGAGTTAGAACAACAAGAGTCTCTAGGAGACAGTCCTGCATATACAGGACGAGCAAGGGAAACACCGAAGAACCGCGACATAAATAGAGAACGTGCAGTTGCAGAAGCAAAAATGTGGGGTGAAAACTGGAAAGAGAGAAACCGGGCGAATGCGCAAGGCAGCTTCGACAGTTCACGAGAATGA 1488 48.05 MGGCFPCFGSSDRNGAKEATKKDSAKDGATAQSHRVSRVSSDKSKTWSVSDAKNEPTVQKDGTTAHIAAQTFTFRELATATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFPPDKEPLNWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPTRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNTAASQSNRMSGTTPRSRDERRGLPDGLDSPDERGRGRSPSNYRNSGGTELSRIDTGGGSGRKWELDELEQQESLGDSPAYTGRARETPKNRDINRERAVAEAKMWGENWKERNRANAQGSFDSSRE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9107178 9111883 - Carg17362-RA Car06g01271 151007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01271 495 MobiDBLite consensus disorder prediction 1 57 - -
Car06g01271 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Car06g01271 495 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Car06g01271 495 MobiDBLite consensus disorder prediction 454 479 - -
Car06g01271 495 MobiDBLite consensus disorder prediction 30 57 - -
Car06g01271 495 MobiDBLite consensus disorder prediction 15 29 - -
Car06g01271 495 MobiDBLite consensus disorder prediction 369 495 - -
Car06g01271 495 Pfam Protein kinase domain 89 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01271 495 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01271 495 MobiDBLite consensus disorder prediction 382 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01271 Car14g01463 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01585 Car-Chr1:13138239 Car06g01271 Car-Chr6:9107178 5.63E-167 dispersed
Car04g00240 Car-Chr4:1334393 Car06g01271 Car-Chr6:9107178 0 dispersed
Car04g00891 Car-Chr4:5114027 Car06g01271 Car-Chr6:9107178 9.43E-179 dispersed
Car04g01328 Car-Chr4:7690763 Car06g01271 Car-Chr6:9107178 0 dispersed
Car06g01271 Car-Chr6:9107178 Car17g01306 Car-Chr17:9830000 0 dispersed
Car09g00044 Car-Chr9:208991 Car06g01271 Car-Chr6:9107178 3.64E-159 dispersed
Car12g00791 Car-Chr12:7619850 Car06g01271 Car-Chr6:9107178 7.53E-153 dispersed
Car14g01463 Car-Chr14:12216354 Car06g01271 Car-Chr6:9107178 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88957 PF00069 Pkinase 1.00E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01271 - - csv:101207561 927.546