Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01274 ATGGCCGCCATTTCAATTTGCTTTGCTCCGCAAGCTCTTGCACGGCCCAGAATTCGAAACGCTAGAAGAATACAGTCGCCCAAGAAGCTTCGAGGGAACGACAAGCTTGATCGTAATAGCGTTAAGATAAGAACCAATTCGAAGGAGTTATCTTCCATTGGCGTTGAAGCCACTACCTATACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAGCTTTGATTCCCCGTCGTTTGATTCTACTTCTTCTTCTTCTTCGAAGGTTTCGTCCGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAGGAAAATGATTTGGATTCTTTGAACTACGAAGAGAGGGAGGAAAAAGAGGAAGGAGGATTGGATGGGAATTTGGGTTTTGGGAATGGCTATGGGAAGTTTGAAGTGTTTGAGGGTGAATATGACTCTGAAATGGAGGAGTATGGCGATGATAGTGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGTTAGATGAGGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGGAGATTTGTTGATACTGATGAAGTGGGAACCTATTATGATGGTGCTTATGAAGCTGGCGAAGAAGATGTGAAGGAGAAGGGGCTGCCAGCAGTAATGCGGTGCTTTGATCGAGCGAAAATCTATGTGAAAGCTGGAGATGGTGGCAATGGCGTTGTGGCATTTCGGCGCGAGAAGTATGTGCCGCTGGGTGGCCCTTCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGCGTCAATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCAGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCGAAGGGTGAGGATGTGGTGGTGAAGGTGGCCCCTGGAACAGTGATCAGAGACGCATTTAGCCAGGAGATTCTGTTGGAATTGTTACATCCGGGGCAGCGGGCTCTGTTGCTGCGCGGTGGACGAGGTGGAAGAGGCAATGCATCATTCAAATCCGGGTCAAATAAGGTTCCGAAGATTTCAGAGAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTCGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCCCAGCCAGCCATAGCAAATTACCCTTTTACTACCCTACTCCCAAACTTAGGTGTTGTTTCTTTTGACTATGACTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGCGCACACGAGGGGTTTGGCTTAGGCCATGAGTTTCTACGTCACACTGAAAGGTGTTCTGCACTGGTGCATGTGGTCGATGGGTCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTAGAGCTCTTTAGCCCCGCACTAGCTGAAAAGCCCTATCTTGTTGCCTATAACAAAATGGATCTTCCTGAAGCTTACGAAAACTGGCCAGCATTCAAGGAAAAGCTTCAAGCTCGTGGGATTGAAACTTTTTGTATGAGTGCCGTACAAAGAGAGGGCACTCATGAAGTCATCAGTGCTGCATATCAGTTACTAAGGGAAACTAAAGAAGCCAGGGAATTTCAAGGTGGGAAAATACCAGAGAATCTTGACCATGTGGCAGATAGAATACACAAGCAACGTAGTGCTTCTATTGATGACTTTGAAATTGTTCGTGATAGCGGTTCCTGGCATGTAGTTGGATCTGGTTTACAACGATTTGTTCAGATGACAAATTGGCGTTACATGGAGTCCGAAAGAAGGTTCCAACATGTCATGGAGGCATGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCATCAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCCAATAGCTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTGTGAAATGGCCAGAGTGGAAGTAA 2001 46.58 MAAISICFAPQALARPRIRNARRIQSPKKLRGNDKLDRNSVKIRTNSKELSSIGVEATTYTRLPPREDFALLSFDSPSFDSTSSSSSKVSSEVKLLDSDVAIIEEENDLDSLNYEEREEKEEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEYGDDSEVEEEEEEEELDEEGEKVLAFRKGRFVDTDEVGTYYDGAYEAGEEDVKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPLGGPSGGDGGRGGNVYVEVDASMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEILLELLHPGQRALLLRGGRGGRGNASFKSGSNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPALAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIETFCMSAVQREGTHEVISAAYQLLRETKEAREFQGGKIPENLDHVADRIHKQRSASIDDFEIVRDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGIKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9136025 9142479 + Carg17359-RA Car06g01274 151010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01274 666 Coils Coil 102 122 - -
Car06g01274 666 ProSiteProfiles Obg domain profile. 212 370 IPR006169 -
Car06g01274 666 MobiDBLite consensus disorder prediction 152 171 - -
Car06g01274 666 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 371 539 IPR031167 GO:0005525
Car06g01274 666 Pfam GTP1/OBG 216 369 IPR006169 -
Car06g01274 666 Pfam 50S ribosome-binding GTPase 372 492 IPR006073 GO:0005525
Car06g01274 666 Hamap GTPase Obg [obg]. 213 539 IPR014100 GO:0000287|GO:0003924|GO:0005525
Car06g01274 666 Pfam Domain of unknown function (DUF1967) 574 641 IPR015349 GO:0000166
Car06g01274 666 MobiDBLite consensus disorder prediction 644 666 - -
Car06g01274 666 ProSitePatterns GTP1/OBG family signature. 424 437 IPR006074 GO:0005525
Car06g01274 666 ProSiteProfiles Obg C-terminal (OCT) domain profile. 566 643 IPR015349 GO:0000166
Car06g01274 666 MobiDBLite consensus disorder prediction 152 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01274 - - - cmax:111472313 1203.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00547 Car-Chr1:3238016 Car06g01274 Car-Chr6:9136025 7.21E-38 dispersed
Car06g01274 Car-Chr6:9136025 Car09g00113 Car-Chr9:554491 2.55E-56 dispersed
Car06g01274 Car-Chr6:9136025 Car01g00033 Car-Chr1:160147 3.56E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01274 Car_Chr06 FPKM 59.664555 63.310905 0.548033 0.882851 2.985236 3.006536 2.132986 0.498828 0.678411 0.52777