Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01276 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCTGAAAGGCCTGAAGAGGCTGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGAACTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTCAACCGTCTGTTTATCCGCCTGTGCAGTCTCCATCTGCACATTCGTCACAGCAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGTTGTACAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTACCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGCCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTAATTCGAGATCAAGTGTTGTTCTTAGCCAAATAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCAGGCCTGTCAGCGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGACGTACTTGA 1446 49.38 MKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRTGGRDYPERVGQPLCQYYMRTGMCKFGASCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPLPAPMPPQPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPTYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVNSRSSVVLSQIGLPLRPGAPPCTHFMQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSMSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSTTSVEGRT 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9156655 9159840 - Carg17357-RA Car06g01276 151012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01276 481 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Car06g01276 481 MobiDBLite consensus disorder prediction 425 481 - -
Car06g01276 481 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Car06g01276 481 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Car06g01276 481 MobiDBLite consensus disorder prediction 1 20 - -
Car06g01276 481 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Car06g01276 481 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Car06g01276 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Car06g01276 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Car06g01276 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Car06g01276 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Car06g01276 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Car06g01276 481 MobiDBLite consensus disorder prediction 277 300 - -
Car06g01276 481 MobiDBLite consensus disorder prediction 1 44 - -
Car06g01276 481 MobiDBLite consensus disorder prediction 277 306 - -
Car06g01276 481 MobiDBLite consensus disorder prediction 411 481 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01276 Car14g01459 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01276 Car-Chr6:9156655 Car11g00844 Car-Chr11:5062614 5.75E-20 dispersed
Car14g01459 Car-Chr14:12187897 Car06g01276 Car-Chr6:9156655 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3750 PF00642 zf-CCCH 4.80E-09 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01276 - - mcha:111009281 793.882