Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01277 ATGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAGAGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACCGAAATGGTCGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCATTACAGCGTACTGAGAGACAGTGAAAGTGAGCAAGAAAGTAATGAGGATTCGGGAGCAACAAGAAAGCCTCAAAAGAGACTGCGTGGAAAGTCACGAAATAACAACTCAAAGGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAACTATGGCTGCCTGTCATTGTTGAAGAAAAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGCGTCCCTGTATCATATTCATACGATAAAGATAGTAGAGAGAGGATTTTTTCACCTTCCAGGCATACTAGTAAGCTAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCGCAACGCGATGGTTCTCCTCAACTTTCACAAACACCAAATCCGAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAATGCAGACTATGATCAGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTACGGAAAGAAGGCAGAAGTTGAAGAAAGTATGTATAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGGCAAAAGTCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTTGATGTAAAATCTGTGAGAACCTCTTTTAAAGGCCCAAGGAAGAGAAGTAAGAAAGCTCTATTTGGAGATGAATGCTCGGCGTTTGATGCACTGCAAACTTTAGCTGATTTGTCTTTGATGATGCCAGACACTACTGCTGACACTGAGCCTTCTGCAAAGGTTAAAGAAGAAAATCTTGATGTCATGGACAAGTCTAAAATGAAAGGGAATCATTCAGTTGTGGGAGCTGGAACCTCTGCTTCCAAGACATCTAAGACGGGAAAGGCTTCAGGCAACAATGTTGGTCCTATTCCTGAAGCAGAAGGAATTCAAGGATCCAATAATGGAAATCGTAAAAGGAAACAGAAGTCCTCTCCGTTTAAAATTTCATCTAAAGATGAAGATAGCAACGATTCTCGTGTCAATGACACTCCAAAAACCAAGGCTACAGATGATGGAAAGAGTTCTTTTGGTAAAGTTAAACGGTCCCCTCATAATGCTGGACTGGCAAAATCTAGCAAAATATCAAAACCTCTAGATCATCATTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTGTCCACAACACAAGTTCCATCAATTAACCCAATCAGCTTGCCTACCAAAATGAGAAGCAGGCGGAAGATGGACCTGCTGAAGTCGCAAAGAGATTCAAAGATTGCTGATAACATTTTGATCGATCAACTTAATGTAACTGCTCATTCATTAGATGATAGACCACATGATCTCAAGGAGCAGCATTCTAATTGCCTATCTTGGCATAAATTGCGAAGATGGTGTGTTTTTGAGTGGCTCTACAGTGCAATTGATTTCCCATGGTTTGCAAAATGTGAGTTTGTAGAGTATTTAAATCACGTTGGATTAGGTCACATTCCTAGATTGACACGTGTTGAATGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCTGCACAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACCGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGAGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGCGTGACTCTCGATAAGATATTTGGTAATCTCAATGAGGTTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATAAAATCAACCAGTAACGATAAACTTGAAAGCACTGATGGTTCTGTGTTTATTTCCCCTTCCACTCATCATATCAACAAATTAATTAAACAGGCAAAGTTAGGCCTACACATTATTATTGACCTGCCGGTAAGTGATAAAGGAATTGTTCGTGGCCAGGTCGACCTTGGGTGCTCTAATCTACAAACTAAATTTGGGCTTCTTAATGAGACTGTCGGTATCCAACAGGAGGCAAGTTCCCAACTTTCTGTCCTTGCTCAAATTCAAGCTAAAGAAGCTGATGTTCATGCTCTGTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTTAATGAACAGGCATGCGTTTCCTCTGCTCTGTATAGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGCTCTCATGCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAAGCAATGCAGGCAATTCTTGCTCTGAAAAAAAGAGAAAGTAATTTGGAGAACATTGAAGAAGCCATTGATTTTGTGAGTAATAAACTCTCAGTAGATGATTTGGCCTTGCCAACTGTGAAATCAACATCTGCAGATACTAGTAATGCCACTCCAGTACCTCAGAATCATTTCAATGTGGGTGCATCAAACCCATCAGCTGCTAATGATGTAGTTGGTTCCAAGTCCAATAGCCCATCCGACAAGCCTGAAGTGGAGATCCCTTCAGAACTTATTGCGCACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCGCCAGCTGATGTTGCTCAGGTACTGGATTCTGCTGTCAATAGTTTGCAGCCATGTTGCCCTCAGAACCTTCCGCTATATGCAGAAATACAGAAATGCATGGGCATTATAAGGAGCCAGATACTTGCGCTTATACCTACATAG 3459 41.8 MKRKFADLLGPQWSRDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGATRKPQKRLRGKSRNNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERIFSPSRHTSKLKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDTTADTEPSAKVKEENLDVMDKSKMKGNHSVVGAGTSASKTSKTGKASGNNVGPIPEAEGIQGSNNGNRKRKQKSSPFKISSKDEDSNDSRVNDTPKTKATDDGKSSFGKVKRSPHNAGLAKSSKISKPLDHHSSSSTDHKREDGDYALSTTQVPSINPISLPTKMRSRRKMDLLKSQRDSKIADNILIDQLNVTAHSLDDRPHDLKEQHSNCLSWHKLRRWCVFEWLYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLDKIFGNLNEVKINGLLKEAKIEDYIKSTSNDKLESTDGSVFISPSTHHINKLIKQAKLGLHIIIDLPVSDKGIVRGQVDLGCSNLQTKFGLLNETVGIQQEASSQLSVLAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQACVSSALYSLRQRNTYQGTSPLMFLKPVHDLGDPCSHAQEPGSHVAEIVGSSRAKAQTMIDEAMQAILALKKRESNLENIEEAIDFVSNKLSVDDLALPTVKSTSADTSNATPVPQNHFNVGASNPSAANDVVGSKSNSPSDKPEVEIPSELIAHCVATLLMIQKCTERQFPPADVAQVLDSAVNSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9170309 9182584 + Carg17356-RA Car06g01277 151013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01277 1152 MobiDBLite consensus disorder prediction 399 418 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 446 479 - -
Car06g01277 1152 Coils Coil 649 669 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 82 127 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 376 394 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 82 100 - -
Car06g01277 1152 ProSiteProfiles SANT domain profile. 8 45 IPR017884 -
Car06g01277 1152 Coils Coil 876 899 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 111 127 - -
Car06g01277 1152 Pfam DIRP 596 697 IPR033471 -
Car06g01277 1152 Pfam Myb-like DNA-binding domain 12 47 IPR001005 -
Car06g01277 1152 MobiDBLite consensus disorder prediction 1037 1079 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 370 520 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 204 223 - -
Car06g01277 1152 Coils Coil 987 1024 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 204 220 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 1037 1078 - -
Car06g01277 1152 MobiDBLite consensus disorder prediction 495 516 - -
Car06g01277 1152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01277 - - - bhj:120080265 2003.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01277 Car14g01458 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01037 Car-Chr12:10237668 Car06g01277 Car-Chr6:9170309 8.00E-23 transposed
Car12g01038 Car-Chr12:10248042 Car06g01277 Car-Chr6:9170309 4.62E-32 transposed
Car14g01458 Car-Chr14:12159916 Car06g01277 Car-Chr6:9170309 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3751 PF06584 DIRP 2.30E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01277 Car_Chr06 FPKM 314.07489 320.450409 2.581762 3.150516 2.378252 2.426107 2.012862 16.016432 16.13504 13.067287