Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01288 ATGCTTCAAGAAGCTTCAACAAAAGCCGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGATAACATAGATGGAATTGAGGTTTCCGACAAATTCGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCTTTGAGTGCAAATGCAACCTTAGCTAACACAAATATATGCAATGGGTTGATAGGAGTAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTGCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCAACATCTGAATATGATTCATGCTTGTTAAAGTCCACGAGTGCTCCTTCCGGAAGTGATGGTTTTCTTAATGTTAAGGAATTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCCGAAGAAAATGGATGGCTGTTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGGACATTGTATGAAACCATCGTATTTTATTTTAGCCTACTAGATTGGGGTGCCAAGAGTGAAACCTCGGATATTTTGGACATGGATAATTCACATCTTGATGATAGTAGCATTACTCAGGGAAGTTTTTCTACTTTGAGAAACAATAGTAAAAGTGCTTCAGGAATCAACAATATATCTGAGAAACGTTCACATGCCAAAGCAGGAATGGCAAACTATCCTCTAAGGCATGGGGTGCTAGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTATATACATTAAATTTGGGTGATAGTAGAGCAGTACTGGCTACTCTTGATGAAGGTGCAATGAGAGGGAATAGGGGACTGAAAGCTGTCCAGCTCACTCAGAGTCACACTGTGGATAATGCACTTGAAAGAGCGAAGTTACAATATGATCATCCTGATGATCCCACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCTACTCAACCGGCATTGTCTGTCCATAGGATATCAAAATCAGATTGCTTTGTAATAGTTGGCAGTGATGGTTTATTTGACTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATATTTACTGGAGCAGCTCTTATTGAAAGCTGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGAAGAAGAAGGAAATATCACGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1560 41.28 MLQEASTKAEGELEVSFGYKCNDNIDGIEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGVEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSCLLKSTSAPSGSDGFLNVKELQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFSLLDWGAKSETSDILDMDNSHLDDSSITQGSFSTLRNNSKSASGINNISEKRSHAKAGMANYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNRGLKAVQLTQSHTVDNALERAKLQYDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKYLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9234751 9240469 - Carg17345-RA Car06g01288 151024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01288 519 Pfam Protein phosphatase 2C 268 456 IPR001932 -
Car06g01288 519 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 518 - -
Car06g01288 519 SMART PP2C_4 132 504 IPR001932 -
Car06g01288 519 SUPERFAMILY PP2C-like 152 507 IPR036457 -
Car06g01288 519 Gene3D - 118 515 IPR036457 -
Car06g01288 519 ProSiteProfiles PPM-type phosphatase domain profile. 138 506 IPR001932 -
Car06g01288 519 PANTHER PROTEIN PHOSPHATASE 2C 3 518 IPR015655 GO:0004722|GO:0006470
Car06g01288 519 CDD PP2Cc 151 506 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01288 Car-Chr6:9234751 Car20g00353 Car-Chr20:1990725 1.24E-66 dispersed
Car14g01446 Car-Chr14:12116698 Car06g01288 Car-Chr6:9234751 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01288 - - csv:101202885 889.026