Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01293 ATGAAGATGACCATCCCGCCGTCTCAACATGCCGACAATGACCGGAGCACCACCGAGCTTCGCGCCTTGGACTGCAACCTCACCTCCCTTTGCGACCACATCCAGATTGAGGGGTTTAATTCTGGCGCATTTTCTGACATTATCGTCCACGCCATGGGCTCCACGTACCGCCTTCATCGCTTAATTCTATCGCGCAGCTCTTACTTCAGGAATATGCTTCATGGGCCATGGAAAGAGGCCAGTGCTCCTGTTCTGACCTTGCACGTTGATGATAAGAATGTCAATGGGGAGGCAATTGCTATGGCGTTGGCATATCTGTACGGACATCATCCTAAGTTGAATGACAATAATGCTTTTCGTGTTCTTGCTGCTGCTTCCTTTCTCGACCTTCAGGATTTGTGTGCGATATGTACAGATTTTATTATAGCCGAACTGTGGACTTCAAATTTCCTGGTTTATCAGGTGTTTGCGGAGAGCCAAGATTATGGAATACACGGAGAACGGGTGAGAAACGCTTGCTGGGGTTACCTTTGTCAAAGTGGTGCCATGGAATTGAAAGAGGTACTTCCAAAGCTTTCATCTCAAACGTTGTATGCTCTGCTGACATCCGATGAATTATGGGTTCCTAGCGAAGAGAGACGGTTTGAACTTGCATTGTTTACGTTCCTTGCGAAAGGGGCCCATTGCAAGGAGGAACCTTCTGAACCAGGTTGTTCCAGTTCTGAGATCGAAAATTCCAAGACACGGGAAAATCGTTCAATGGATTCCACTAATGTAGGGTTGGAATCTGAGCTAGGACATTTAAGTTTGAAAGATGGCCTAGAGGTCCATAAAGGTTCTCATAATCTTCTTGTTCAGCTTCCCGACTGTGTGGTTGACTTCCAAACAGGGGCTTGCAGCTCTAAACAGAAGATGCAACAAGCTACATACTCACAGTCAAATTTAGAAGCACCATTTTTGTGCAACGCTGAAGGGTCATCATCTTTGAATAATTCATTCTCCGAGATGAATGGAATTTTAAGCTCATGTTCTTATATTAATTTACCAGTTACTGTTGGAGTAAGTAGACTTGGTGCAAGTGGGATTGCTATGGAAGGGCCATCAGAAGAAGGCTGCTATCAATTGGATAACAATACTTGGCTTACTAGGGACCAAACAAGCCATTGTGCCTCTGTGAACTCTTCTACCAATGGACTCCCTTCAAATGATTGGGGAAGATGCGGCATGCCTGCTGTTTCATGGGGAGGCAGGGTCGTAGGTAGAAGGCAGCTTAAAAGTTACGCGAAAGGCAACTTAAGTGCAAGGGGAGAGGATTATGATGTGTTCGATAGTTTATTTGAAGGGGGTTCACTTTTGTACTGCAATATGACTTTTGAAGCTCTTCTCAATATGAGAAAACAACTTGAAGAGTTCGGTTTCCCTTGCAAAGCTGTAAACGATGGTCTTTGGCTGCAGATGCTTTTAAGGCAAAGGGTACAAGAGATTGTTGCTGATACATGCAAAAGTTGCTGCCTTACAAGTATAGCATGTGCATGCAGGCAGCCGTTTGCATTTGCACGCGGAGTCAGTGCGTCGGGATATTATATCAATGAGCATGATCAGAATAGTTCTCCTGGAAGTGTGGGCAACATATATGTTGCAGAATCTTCTCAAGGTGAAGGAAATGGCCCTTTTAAACCTGTCCGAGTACATGTTAGGGGGCCAATTGAAGGACTTGCTGGAATTGGACGTGGAGCCACTTTTGTGCCAGCGAGTGCTTGGCCTCCAACACGCTTTGTCTTCTCCCGTGTACCTATTGGCATGGGCAACAGAAATTGTCATCAGTCGCTTGCTAATGATGATTCAGAGGCTAGAGCCGAGCACAGTGGGGACTTGTCGGGAGATGGATTGACAGCGTTGGTTGGTTTGAGCCAAGGAGGAAGCGGCAGTATGAATGCTCAGGGAGAACCAACAGAGAGAGGATATGAGATGGAACTGCAAAGCAGAATATCTGGAACCTCCATGGCAGGTCCAAGTGCTACTGGTATTCCTGTTCAGATGCTTCAAGCTCCAGATCATGCCCTTGGAATTGAGTGGGAGAATGAAAACAGTACAATTGCTTTAGATATGAAAACGCCTTTAAGTCACTTCCCTCCTTTTCGCTTTGGCGTACAATTTGAGGACGTTCATAGACTTAGTGATGGCCAAGTCAAGCATTCACCTGAGTTTTTCTATGCTGGTTCTCTATGGAAGGTTAGTGCTCAGGCTTTTAACGATGAAGACCCTCAAGGACGCCGAACGCTAGGATTATTTCTTCACAGGCGGAAGGCGGAAATATCCGATTCTCTGAGAAAGGTCCATATGTTTGTGGATTCTCGTGAAAAAGTCACCGCGCGATATCAGTTGATATGTCCATCAAAGAGGGAGGTGATGGTGTTTGGCAACTTCAAACAAGCAGGAACTCTTCTACCAAAAGCTCCCAAGGGATGGGGTTGGCGAACGGCTCTCCTATTCAACGAGCTCGCCGATTTTCTTCAACATGGAGCCCTGAGGGTGGCTGCTGTCGTGCAGCTAGTTTGA 2559 46.15 MKMTIPPSQHADNDRSTTELRALDCNLTSLCDHIQIEGFNSGAFSDIIVHAMGSTYRLHRLILSRSSYFRNMLHGPWKEASAPVLTLHVDDKNVNGEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIIAELWTSNFLVYQVFAESQDYGIHGERVRNACWGYLCQSGAMELKEVLPKLSSQTLYALLTSDELWVPSEERRFELALFTFLAKGAHCKEEPSEPGCSSSEIENSKTRENRSMDSTNVGLESELGHLSLKDGLEVHKGSHNLLVQLPDCVVDFQTGACSSKQKMQQATYSQSNLEAPFLCNAEGSSSLNNSFSEMNGILSSCSYINLPVTVGVSRLGASGIAMEGPSEEGCYQLDNNTWLTRDQTSHCASVNSSTNGLPSNDWGRCGMPAVSWGGRVVGRRQLKSYAKGNLSARGEDYDVFDSLFEGGSLLYCNMTFEALLNMRKQLEEFGFPCKAVNDGLWLQMLLRQRVQEIVADTCKSCCLTSIACACRQPFAFARGVSASGYYINEHDQNSSPGSVGNIYVAESSQGEGNGPFKPVRVHVRGPIEGLAGIGRGATFVPASAWPPTRFVFSRVPIGMGNRNCHQSLANDDSEARAEHSGDLSGDGLTALVGLSQGGSGSMNAQGEPTERGYEMELQSRISGTSMAGPSATGIPVQMLQAPDHALGIEWENENSTIALDMKTPLSHFPPFRFGVQFEDVHRLSDGQVKHSPEFFYAGSLWKVSAQAFNDEDPQGRRTLGLFLHRRKAEISDSLRKVHMFVDSREKVTARYQLICPSKREVMVFGNFKQAGTLLPKAPKGWGWRTALLFNELADFLQHGALRVAAVVQLV 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9259173 9265072 + Carg17340-RA Car06g01293 151029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01293 852 Pfam BTB/POZ domain 39 143 IPR000210 GO:0005515
Car06g01293 852 ProSitePatterns Serine proteases, subtilase family, serine active site. 665 675 IPR023828 -
Car06g01293 852 MobiDBLite consensus disorder prediction 230 257 - -
Car06g01293 852 ProSiteProfiles BTB domain profile. 45 115 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01293 - - - mcha:111009280 1617.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01293 Car-Chr6:9259173 Car04g02293 Car-Chr4:18412154 9.23E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g300 . . . . . . . . . . Cma06g01502 . Car06g01293 . . . . . . . . . . . . . . . . . . . . . . Lsi05g01544 . . Cme06g00736 . Blo07g00171 Bda11g00523 . . Bpe13g00667 . . . Cmo06g01500 . . . . . . . . . . . . . . Cla05g00656 Cam05g0717 Cec05g0728 Cco05g0727 Clacu05g0712 Cmu05g0677 Cre05g0751 . Csa03g01470 Chy06g00708 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010984 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3752 PF00651 BTB 9.90E-14 CL0033 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01293 Car_Chr06 FPKM 3.032777 3.129177 4.869636 4.984449 6.872032 6.840541 7.291034 6.772766 7.04267 7.357278