Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01297 ATGGGTTTGAAATCAGTATTGTTTGTCTTCGTGATGGTTGCTGCCATGGGAGCTCCATTAATGGTGGTGGAAGCTCAGCTTGGGTCCATTGGCAGTCTTCTTAGCCTTACCAGAATCCAAGGAACTGTCTTTTGCACTGCCAATGGCAACATCGGCACCAATGGCACCGCCACTCCTGCCTTCCCGAATGCAGCCGTGCAACTGCAATGCGGAAACGGAAACGTCGTGTCGACTGCAACAACAAACAGCGCGGGAGTGTTTTCGATTCTGTTAGATCCTTTACAGCTCCTTCTCTCTTCAGTCACCTCCAACTGTAGCGTCGTAGTGAACACGCCACTGTCGAGCTGCAACGCAACGTTACCCTCTGTCGGGAATTTGGTTTCGGCGTTGAATTTGGTCGGAATGACATTTCAGGGACTCCTCCGTATAACCAACATCATCCCCACGGGATTCATATTCCAACCATCTACATAA 474 50.0 MGLKSVLFVFVMVAAMGAPLMVVEAQLGSIGSLLSLTRIQGTVFCTANGNIGTNGTATPAFPNAAVQLQCGNGNVVSTATTNSAGVFSILLDPLQLLLSSVTSNCSVVVNTPLSSCNATLPSVGNLVSALNLVGMTFQGLLRITNIIPTGFIFQPST 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9274776 9275444 - Carg17336-RA Car06g01297 151033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01297 157 Pfam Pollen protein Ole e 1 like 39 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01297 - - - vvi:100249967 194.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01297 Car-Chr6:9274776 Car08g01106 Car-Chr8:7515184 1.62E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003284 1 2 0 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 1 2 2 1 1 3 2 2 1 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01297 Car_Chr06 FPKM 54.924454 63.326874 71.391235 76.229561 67.246048 61.158863 67.841011 123.855347 113.302437 128.360779