Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01312 ATGATTCCCGAGCTCGAGAAACCGAAGATTCTTGAGATAAAGGTCCGAATGGACTGTAATGGGTGTGTTCAGAAGATCAAGAAGGCGTTGTATGGAATCAATGGCATTTACGATATCTACATAGACTTCCCCCAACAGAAGTTGACAATCGTTGGATGGGCTGATCCAGACAGAATCATGAAAGCCATTAAGAAAACTAGGAAGATAGCTACCATTTGTTCCGAGTCTGAACAGGCAGATCCACTAGCTTCTACTCAACTCCCTGATAATCCACTGCCTTCTGGTGGCGAAGCAGAAGCTCCTCCTCCGTCGCATGACGTGGCGATGGTCGATGGGCTACCTGGACATTCACATGTTGAGATAGCACCTGGCCAGACGACCGTCCACGAAGCTCATTCGGGCCAACAGTTTGATTTGACCAATGCTACCGTACAAGCAACACAGCCTCTTGGATCACATGAGGTCGGACAGGTTCATGTTACTCATAACCAGCCATCGGAACACGGCCATGTCGTCCACCAGAGTTCCTTGGAACCCGGTGTTGTCCACCACCTAGGACCAGAGCCTGGCCAGGTTGTCTCGCATCAACCTGAGAATAGCCACGTGGTTCATCAACTACCAGAACATGGTCATGTAGGCCATCAACAGTCACCCATGAACGGGTACGTGGTTCACCAACATCAACCTGAGCATAGCCATGTAGTAAGCCATCATCAACCACCTGATCACGGCCACGTTATCAACCAACAGCCACCCGAGCATAGCCACGGCCACGTAATCCACCACCACCCAACTGAACACACCCATGGCCATGTAGTCCAACACCACCAATCCGAACAAGGCCATGGACGCACCTCAAGCCACAACTACCACCACAATATCCCAAGAACAATTCACGGGTCGACATCGACGCATCCAATGACAGTGATACACAGCTACAACACATACCAACCATCACCCTACGTAACAGAGTACATCCGACCATTGACAACCCACAAACCCTCCCCATACGCCTACGAATACATACCACAGCAGTCATCCTCCAACCATTATAGCCCGAGAATGGACCGTTACAACGACGACTATAACAACACAGGCATAAGCAGCAACAACAACGGGAACATCACATCAATATTCAGCGACGAGAATCCAAACGCTTGTAATCTAATGTAA 1173 49.53 MIPELEKPKILEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIVGWADPDRIMKAIKKTRKIATICSESEQADPLASTQLPDNPLPSGGEAEAPPPSHDVAMVDGLPGHSHVEIAPGQTTVHEAHSGQQFDLTNATVQATQPLGSHEVGQVHVTHNQPSEHGHVVHQSSLEPGVVHHLGPEPGQVVSHQPENSHVVHQLPEHGHVGHQQSPMNGYVVHQHQPEHSHVVSHHQPPDHGHVINQQPPEHSHGHVIHHHPTEHTHGHVVQHHQSEQGHGRTSSHNYHHNIPRTIHGSTSTHPMTVIHSYNTYQPSPYVTEYIRPLTTHKPSPYAYEYIPQQSSSNHYSPRMDRYNDDYNNTGISSNNNGNITSIFSDENPNACNLM 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9392080 9393464 - Carg23750-RA Car06g01312 151048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01312 390 Pfam Heavy-metal-associated domain 14 66 IPR006121 GO:0046872
Car06g01312 390 MobiDBLite consensus disorder prediction 76 120 - -
Car06g01312 390 ProSiteProfiles Heavy-metal-associated domain profile. 17 72 IPR006121 GO:0046872
Car06g01312 390 MobiDBLite consensus disorder prediction 77 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01312 - - - cmax:111470859 734.561
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01312 Car14g01434 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01312 Car-Chr6:9392080 Car03g00720 Car-Chr3:6243109 2.07E-13 dispersed
Car14g01422 Car-Chr14:11933797 Car06g01312 Car-Chr6:9392080 4.89E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01312 Car_Chr06 FPKM 6.47109 9.171682 22.362888 22.143232 51.514244 49.153389 55.538971 8.341846 6.669952 7.214959