Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01314 ATGTCTACGGCGAGTTCTAGCTCTGTAAGGAAACCTAGTGAATCTGTTCCTCTCCAGTTTCCGGCTGGCCTTCGTGTTCTTGTTGTTGATGATGATCCTACCTGCCTTATGATCTTGGAGAAGATGCTTCGGATTTGTCGCTACGAAGTAACGAAATGTAGTCGAGCTGAGGATGCGTTATCGGTCCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGCGATGTTCATATGCCAGACATGGATGGATTCAAGCTTCTGGAATGCATTGGACTTGAAATGGACTTGCCTGTGATTATGATGTCGGTGGATGACGGGAAAAACGTTGTTATGAAGGGAGTGACTCATGGTGCTTGTGACTACTTAATAAAACCTGTTCGAATTGAAGCGTTGAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGTGTTGAGGATGTCGATCGACAGCAAAAGGCGAATGAAGAAGCAGATTATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCGAAGAGGAGGAAGGAGGACATAGACGATGCTGAGGAGAGGGATGACTCATCGACCCTAAAGAAACCGAGGGTTGTTTGGTCCGTTGAGCTTCATCAACAGTTCGTGGGCGCTAAATATCGCCTGTACCTGAGAAGAGTAAGTGGAATGACACTGCAACAGAGTAATCTGAACAACACGTTCATGAGTGCCCAAGAAGCATTTGGCTCGACGTTGAACGGGCTTGATCTTCAAACGCTCGCTGCTGCTGGTCAACTCCAGCCACAGAGCCTTGCTACGCTCCAAGCAGCGGGATTTGGTCGGTCTACAGCGAAATCAGGCATGCCTATGCCTCTTGTTGACCAAAGGAACCACTTTTTTAGCTTCGAAAATCCGAAGTTGAGATTCAGTGATGGACAACAGGCACATTTGAACGGTAGTAAACCGATGAATCTTCTTCATGGAATTCCGACAACGATGGAGCCGAAACAGCTAGCTAATCTGCAGCAGCACTCTGCACAATCTCATGGAAACATGACAATGCAAGCTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTGATGCAGACACCTCAACCACAAGCTCGACCACAGATCCTAAATGAATGTACAGCAACGAGCGTTACAAGGCTTCCACCAACAATACAGCAGTCGATATTGCCGAATGGAACCGCTGGTTCGGTTTTGGCTAGGAATGAATTTACGACTAACAGCAGAGGTGGAGGCTACAATCTAATTTCACCAGCCTCAACAATGTCAAATTTTCCCATGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCACTTCAAAGTACACCAGGGATGTCGAGTATTGTCCCAAAGGGAAGATTCCCGGACGAGGTTAACTCAGTCTCGGATATTAAAGGATCTGACGGTTTCGTTCCGAGCTATGATATGTTTAGGGATCTGCACCCTCAGAAGCCAGATTGGGACTTGCAACACGTAGGCGTGACCTTCGATGCATCGCAAGGTAGCCTTGACATTCCGACCGCAGCATTTGGTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACATAACAGGCACACATCTACGGTAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCCCAAAGTATGGGTCAACAACTCAATCCTCTTTTCGATGATGGCTCGGTGAGAGTTAAAATGGAACGAGCTTCGGAAACCAGCAGTCAAACCGACCTTTTTTCTGAACACTTTGGTCAGGAGGAGGACCTAATGAGTGCACTTCTTAAACAGGTTAGATTGCAGTACCATTGTAACACATCAGTTCGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGCAGACGCGTTTTAAAACCGTGA 1929 46.76 MSTASSSSVRKPSESVPLQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSVLRRYKNGFDIVLSDVHMPDMDGFKLLECIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKANEEADYSSSANEGSWRNSKRRKEDIDDAEERDDSSTLKKPRVVWSVELHQQFVGAKYRLYLRRVSGMTLQQSNLNNTFMSAQEAFGSTLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHFFSFENPKLRFSDGQQAHLNGSKPMNLLHGIPTTMEPKQLANLQQHSAQSHGNMTMQASAQGGQTSSQLMQTPQPQARPQILNECTATSVTRLPPTIQQSILPNGTAGSVLARNEFTTNSRGGGYNLISPASTMSNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSVSDIKGSDGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPTAAFGHQGYASSQQNGHNRHTSTVGKAMFLLEEGSDNGNAQSMGQQLNPLFDDGSVRVKMERASETSSQTDLFSEHFGQEEDLMSALLKQVRLQYHCNTSVREGNETFLIRVWKPLLSRRVLKP 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9404028 9407100 + Carg23748-RA Car06g01314 151050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01314 642 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Car06g01314 642 MobiDBLite consensus disorder prediction 151 200 - -
Car06g01314 642 MobiDBLite consensus disorder prediction 342 370 - -
Car06g01314 642 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Car06g01314 642 MobiDBLite consensus disorder prediction 179 200 - -
Car06g01314 642 MobiDBLite consensus disorder prediction 151 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01314 Car08g01126 CCT
Car06g01314 Car17g00322 CCT
Car06g01314 Car08g01126 ECH
Car06g01314 Car17g00322 ECH
Car06g01314 Car14g01419 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01314 Car-Chr6:9404028 Car09g00371 Car-Chr9:2032866 3.08E-75 dispersed
Car08g00859 Car-Chr8:5737675 Car06g01314 Car-Chr6:9404028 5.02E-12 transposed
Car14g01419 Car-Chr14:11919856 Car06g01314 Car-Chr6:9404028 0 wgd
Car17g00322 Car-Chr17:2014483 Car06g01314 Car-Chr6:9404028 9.95E-171 wgd
Car06g01314 Car-Chr6:9404028 Car08g01126 Car-Chr8:7621855 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3753 PF00072 Response_reg 1.00E-21 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01314 - K14491 csv:101209013 1035.79