Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01323 ATGGCTCGGGAGGGGCAGTTTTTCTTAACTTACTCAAGTTCTATGACTAATATGGCTCTTCGAAAGTTTGTTTATGGTGATACACCTTCCATTAACTTGAAACGTTCAAGTCTCCCCATTAAGGCGCATCAGCAAACTCAATTTGAAGAACTTGAAACTAACCAGACGTTGGAGCCTGATGTAGAAATTGACCTTAGAGAAGTTTATTTTCTTATCATGCACTTTCTTTCATCTGGGCCATGTCATAGAACTTGTGGGCTGCTCTGGGATGAGCTTTTCGAACATCAGCTTTTACCCCGACGATATCATGCTTGGTTTTCTAGAAATGGGATGCAAAGTGGGCATGAAAATGATGATGGCTTGTCATTTCCTTTAAAGTACCAACACTTGGTGGAGAGGTATTCACATGTCGATAAGGACCACCTGATAAAACTTTTGAAGCAATTGATGCTTAACAAGGCCTCTCCATCTAGAGGTATGAATGGTGCAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTAGGAACGGGCACATTTTCACTTCTGAGCTATGATAAAAATGAGGGAGCTAGCAAGCCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCACCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCGTCAACAATGGTGCAGAAAATGCAGAACATAAAGAGGCTACGAGGGCATCGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGATATGTGATAACTGGTTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATTACTGATCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGCTTGCCTGATGGGCTACCAATTTCAGTCTTGCGAGGACATACTGGTGCTGTTACTGCCATTGCCTTCAGTCCCAGAGCTGCATATCAGCTTCTTTCGTCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAGGCCTTCGGACTCAGTGACTGCTGCAGCAAGAAACAGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTTTAGCCAGGGTATGGAGTGCCTATAAAGGAAATAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTGGCTGGCCATGAGAATGATGTCAACTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACAACTGACATTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTCACTTACGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGTAGGTCACATGGGAAGGTTGGCCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCTCCACAGCCTGCTCGAGGCGGTCCTCGTCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGTCTAGACAATCGTTTCGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGAAGCTTAGTGCACTCTTTGACTGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTCTAATCCAAGGATTGCTATGAGTGCTGGATATGATGGGAAAACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTCGATGGCAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCTGGCAATGTCGTCGACCAGGAAACTCAACTCACTACTTACAGGCGGAATTTGCAAGATCTCCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGGCGTTTGGGTGCCATGGGTCTTGAATGGCGTCCATCTTCTCTAAAACTTTCTGTTGGTCCCGACTTCAATCTCGACCCAGATTACCAATTGTTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTAGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATACCGATTCAGAATATAATGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAACTGCTCAACGGATCCAGAATGCAGCTCTGAAGACACAGGGATCGACGATGCCCCTGCTGATGGTCTTCGAAGATCAAATAGGAAAAAACAGAAAGCAGACATGGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGGAATATGGACGAGTATGAAGGTGATATAGTTAGGAGTTCCAGAAGCCAGAAGTCGAAATCTGGCCATAAGCCTTCCAAAAAAAAATCAGCATCTAAGTTGTTAAGACCTCAAAGAGCTGCTGCACGTAATGCCCGTAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGATGAATATGACTCGGGAGGTGATTGCTCAGAAAGTGAATCTACGTTAGAAGATTCAGACATCGAGAGCGATGAATACAAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTCGTAGATGGAACCGAGGAGATGACAAAATCTCTTGATGTTCCTGAATCTCGTGTGGATGTTGGAAACCGAAAGAAGTTGATTCTTAAATTCTCCCTTCGGAATCCGAATAAGATCGATCCTCCTTTAAACACAACACTTACTTGTTCCAACATGGCTGTTGTGGCTAGCTCATCATCAAGGTCCCCAAAGGAAGATATTGAAACCAGTCAGATTCTTATGAGACCAGAGAGGCAATTTGGAAATACTGATGGACATTCTGATCTGACCGAGGTCTACTCAAATGGGAACATAAGATGGGGAGGTTCCAGGGTTCGTTCATCGAAGCGCATAAGATTAGGCGAAACTATGCCTTCTGAGGCATATGCTGCAATGTCTAGTTCGCTTCCCGATGGCTATCATAATGAAAATGAGAACGACGGTCGTGAATCTTTAGAACAAGAAAATCATTTTGGTACTCCATCCCCCCATTCAAAGTTGGAGAATTATTGTGCAGAGAAAATGGGCGATGGGGATGGTGATGCTTCTGGGCAATCTCAGGAGGTTATCAACGGTGGAGTCGTTAAACGTGTCAACAGTAAGTCGAGTGATCACGATGATTCAAATAATTTGAATTTAATGTTTCCTTCAGATGCAACGACCACATCGGTTCAAAATGGGACCACTGCTTCTGAGCAAACTGGAAATATTGCACCAATGCGTGCAAAGATCAGGTTGAGGAGTGTTTCTTTGGACCCTGAACATTCTCTGAAGCACAAAATAGAATCCTTAGATGAAAGCTCAAAGAACGATGAATACAATACGGTGTTCGGAAGCCCTCGGCATCTGAATGGGCTGCAGGAGGATGTCATGAATGGAGCTTATTCTGATCATAGAAATGATTCCCCACAAGATATAGATACTCCAAATGATGAAAAACTAATGTCAACCTTGTGCAACTCTGATGAGTTGCAAGCAGTAGAGACTAACAAAATGTTCACTGCTGTTTATAGAAGATCGAAGTCGAACAAAGGGAAGAGTAATGCAGAAAGCAACGGTTGTGGCTCAGGTGAAAATGCTTCGGGCAACGTTAGTCTACCTGCTGAAGCAGACAATCACAAAAGTATGCCTCGTAAGACACGATCTTCGAGGTTTAAGGATGCCTCATATGATCTAAATAATGTGGGTGACGATCTTAAATCGGACGAAGATCAGGAATCTGAACATAGATCAAGACGTTCTGCAAACTCTTCTGCAAACAGATCCCATATACCAAATGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCGAGATCCACCCGTAACAGGAGGAGTAGTTTTACTCAAGACATAAATCCTGTGGAAAGAAGAAAGTCAGTTCAATATGCCCGAAAAGGATCGTGGTTAATGATGCCCGCACATGAGGGTGGCTCCAGATATATTCCCCAACTTGGCGACGAAGTTGCGTATTTGAGGCAGGGCCATCAAGAATACATAGATCACTGTTGTACAAATTACTATCACACAAAAGACACCGGACCTTGGACCTCAATCCGGGGACCTGTACGAGCGGTTGAGTTCTGTAAGGTTGTCGAGCTTGTTTATTCTACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCTACTTCCCATGTATACCTCCAATCTTTGAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCCGACTTCTTAGTCGAAAGAACTCGGTTTGAAGCGGCAATGCAGAGGAATTGGACATTCAGGGATAAGTGCAAAGTGTGGTGGAAAAACGACGTCGGAGTAGATGGTAGTTGGTGGGATGGTCGGATTGTCTCCGTGCAGGCAAAATCTTCGGAGTATCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCAGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGATCAGCCTCGAATAGACGACGAAAACAAAGCGAAGTTGTTAACTGCCTTCGACCAATTAACGTCGACTTCTATGCAGGGTCGTTACGGGATTCAAGATTTGATGCTTCTCGCACGAAAGACACAATACAAGAACAGGTTTCCTGTACCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAATGATTACTACCGAAGCTTGGAAGCATTGAAGCACGACTTCATGGTAATGCTATCAAATTTCGAGTCATTCGTGGCAAAGAATGAAGACATGTCGAAGAAAATTAGACGATTGTCGGACTGGTTTAGTCGCAACATATCACCTTTGTAG 5214 43.34 MAREGQFFLTYSSSMTNMALRKFVYGDTPSINLKRSSLPIKAHQQTQFEELETNQTLEPDVEIDLREVYFLIMHFLSSGPCHRTCGLLWDELFEHQLLPRRYHAWFSRNGMQSGHENDDGLSFPLKYQHLVERYSHVDKDHLIKLLKQLMLNKASPSRGMNGAIAPNAADVPTLLGTGTFSLLSYDKNEGASKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPRPSDSVTAAARNSGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSAYKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLTTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSNRKKQKADMEVMTSSGRRVKRRNMDEYEGDIVRSSRSQKSKSGHKPSKKKSASKLLRPQRAAARNARNWISSFKGKSTDGEDEYDSGGDCSESESTLEDSDIESDEYKRSLQNRNKHSKGKEVFVDGTEEMTKSLDVPESRVDVGNRKKLILKFSLRNPNKIDPPLNTTLTCSNMAVVASSSSRSPKEDIETSQILMRPERQFGNTDGHSDLTEVYSNGNIRWGGSRVRSSKRIRLGETMPSEAYAAMSSSLPDGYHNENENDGRESLEQENHFGTPSPHSKLENYCAEKMGDGDGDASGQSQEVINGGVVKRVNSKSSDHDDSNNLNLMFPSDATTTSVQNGTTASEQTGNIAPMRAKIRLRSVSLDPEHSLKHKIESLDESSKNDEYNTVFGSPRHLNGLQEDVMNGAYSDHRNDSPQDIDTPNDEKLMSTLCNSDELQAVETNKMFTAVYRRSKSNKGKSNAESNGCGSGENASGNVSLPAEADNHKSMPRKTRSSRFKDASYDLNNVGDDLKSDEDQESEHRSRRSANSSANRSHIPNEEWGSSSRMTVGSRSTRNRRSSFTQDINPVERRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCTNYYHTKDTGPWTSIRGPVRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPTSHVYLQSLKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEYPESPWERYTIKYRSDPAEPHLHSPWELYDTVTQWDQPRIDDENKAKLLTAFDQLTSTSMQGRYGIQDLMLLARKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFSRNISPL 1737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9452705 9466978 - Carg23739-RA Car06g01323 151059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01323 1737 MobiDBLite consensus disorder prediction 886 903 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 1257 1277 - -
Car06g01323 1737 ProSitePatterns Trp-Asp (WD) repeats signature. 615 629 IPR019775 -
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 375 - -
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 338 IPR001680 GO:0005515
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 381 IPR001680 GO:0005515
Car06g01323 1737 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Car06g01323 1737 MobiDBLite consensus disorder prediction 1303 1422 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 1097 1127 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 950 971 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 932 949 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 792 971 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 1336 1379 - -
Car06g01323 1737 Pfam Bromodomain 1668 1722 IPR001487 GO:0005515
Car06g01323 1737 MobiDBLite consensus disorder prediction 807 831 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 839 885 - -
Car06g01323 1737 Pfam WD domain, G-beta repeat 335 372 IPR001680 GO:0005515
Car06g01323 1737 Pfam WD domain, G-beta repeat 589 628 IPR001680 GO:0005515
Car06g01323 1737 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Car06g01323 1737 Pfam WD domain, G-beta repeat 250 287 IPR001680 GO:0005515
Car06g01323 1737 Pfam WD domain, G-beta repeat 409 437 IPR001680 GO:0005515
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 330 - -
Car06g01323 1737 MobiDBLite consensus disorder prediction 1303 1332 - -
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 290 - -
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 637 IPR001680 GO:0005515
Car06g01323 1737 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515
Car06g01323 1737 MobiDBLite consensus disorder prediction 1381 1421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01323 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3017.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01323 Car14g01407 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01323 Car-Chr6:9452705 Car03g00788 Car-Chr3:6546732 7.75E-08 dispersed
Car14g01407 Car-Chr14:11840758 Car06g01323 Car-Chr6:9452705 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01323 Car_Chr06 FPKM 1.417477 1.655202 2.871328 2.514471 1.990561 2.192485 1.907102 3.229057 3.326856 3.49655