Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01329 ATGGTTTCGAGTAATCGGGGGACGAATTCGCATCAGCAACAAGCAGAGTCCTCGAACACGAACACGAACACGAACACGAGCCATATGCGATCTAATCGTACAGAATCCATCAGCAAAGCCGTAGCGCAGTACACCATCGATGCTCGTCTTCACGCAGTGTTTGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACACAATCTGTGCCGGAGCAGCAAATTACGGCTTATTTATCGATGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCTATCGATGAGGCAAATTTTCGGGTTATTGCTTATAGTGAAAACACTAGGGAATTGCTTGGTCTTACTCCTCAATCAGTGCCAAATCTTGAAAAGATAGAGATTCTCACAATTGGAACTGATGTACGGAACTTGTTCACTCCCAATAGTGCAATTTTGCTTGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTAAACCCTGTTTGGATTCATTCTAAGAGTTCTTTGAAGCCATTTTATGCTATTTTGCATAGGATTGATGTAGGAATTGTGATTGATTTAGAGCCAGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTCCAATCGCAAAAGCTTGCAGTGCGTGCAATTTCTAAGTTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATACGATCGAGTTATGGTGTATAAGTTTCACGAAGACGAGCATGGTGAGGTTGTAGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGTGTTAGAATGATTGTCGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGCTGCAGGGCTTATGCAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATTCTCAGTATATGGCCAATATGGGCTCCATTTCGTCGTTAGCAATGGCTGTTGTTATCAATAATAACGACGACGAAGCTATTGGTGGGCGAAGTTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCACCATACTTCGGCTCGGTGTATTCCGTTCCCTCTCCGGTATGCATGTGAGTTTCTAATGCAAGCATTTGGACTTCAACTTAATATGGAATTGCAATTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGAACTCAAACTCTTTTATGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTATTACTCAGAGTCCAAGCATCATGGACTTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAGTATTACCCTCTAGGCGTGACGCCAACCGAAGCCCAAATAAAGGACGTCGTGGAATGGTTGCTAGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCCGATGCTGGCTATCCAGGGGCAGCCTTGCTTGGTGGTGCAGTTTGTGGAATGGATGTTGCCTATATCACCAAAAGGGATTTTCTCTTCTGGTTCCGATCGCACACAGGAAAAGAGATCAAGTGGGGTGGCGCAAAGCATCACCCAGCGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTTTTAGAAGTAGTAAAATCCCGTAGTTTACCGTGGGAGACGGCAGAAATGGATGCTATTCATTCATTGCAGCTTATTCTTCGAGATTCATTCAAGGATAACGCTGCAATCAATTCGAAAGCCGTTGTGCATCCTCAACTAGGGGATCTCAACTTGCAAGGGATCGATGAGCTCAGCTTGGTTGCTAGAGAAATGGTCCGGTTGATCGAGACTGCAACTGCTCCAATCTTTGCTGTAGATGTCGACAGCCGTATCAATGGATGGAACGCTAAGATAGCCGAGTTGACTGGGCTTGCAGTCGAGGAAGCTATGGGGAAATCCCTAGTTCGTGATCTCGTGTATAAAGAATCTGAAGAAATAGTCGACAAACTCGTTTCCCGGGCTTTAAAAGGTGAAGAAGAAAAGAATATAGAGATAAAAATGAAGACATTTGGGCGAGATCCAGATGATCAAAGACAGCCAATTTTTGTGGCTGTCAATGCTTGTTCTAGCAGGGACTACACTGATAACATAGTAGGCGTTTGTTTTGTTGGTCAAGATCTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAATGTGATTATAAAGCCATTGTTCATAGTCCCAGTCCTCTTATCCCTCCAATATTCGCTTCGGACGACAATACGTGTTGCTCGGAATGGAATACCGCCATGGAAAACCTCACCGGATGGTCCAGAGAAGACATAATAGGAAAAATGCTAGTAGGGGAGGTTTTTGGAGATTGTTGTAGACTGAAGGGGCCAGATGAATTGACCAAATTTATGATTGTCTTGCACGGTGCAATTGGAGGGAAGAACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGGCAGATTGTTGGAGCTTTCTGCTTTGTTCAAATTGCTAGTCTTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGTAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCGCTTCTGGAGGCTACGGATTTGAGTGAAGATCAGAAGCAGTTTCTGGAGACCAGTGTTTCTTGTGAAAAGCAGATGTTAAAGATTATAGAAGATATGGATTTGGAAAGTATCGATGATGGTACAATGGAGATTGAGAAGGGGGAGTTCTTACTGGGAAATGTTATTAATGCTGTTGTTAGTCAAGCGATGTTACTACTCAGAGAAAGAAACTTACAACTGGTTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTATATGGCGATCAAGTGAGAATTCAACAGGTCTTAGCTGATTTCTTGTTGAACATGGTGCGTTACGCACCGTCTCCGGAAGGCTGGGTAGAATTACGTGTCTGTCCATTCCTGAAGCAAAACTCGGATCGACTTCGTCTCGCACACACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGATACAGGACATGTTTCACAGTGGCCGATGGGCGACTCAAGAAGGGTTAGGGTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAATCTGAAAGATGTTATTTCTCGATCACTCTCGAACTCCCTTTAACAGAGAGAGCTCTCGGCAACATCGGTTAG 3414 44.0 MVSSNRGTNSHQQQAESSNTNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEANFRVIAYSENTRELLGLTPQSVPNLEKIEILTIGTDVRNLFTPNSAILLEKAFGAREITLLNPVWIHSKSSLKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINNNDDEAIGGRSSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDVVEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIKWGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNAAINSKAVVHPQLGDLNLQGIDELSLVAREMVRLIETATAPIFAVDVDSRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPIFVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGPDELTKFMIVLHGAIGGKNNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFVQIASLELQQTLRMQRQQEKNRFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQMLKIIEDMDLESIDDGTMEIEKGEFLLGNVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLRLAHTEFRIVCPGEGLPPELIQDMFHSGRWATQEGLGLSMCRKILKLMNGEVQYIRESERCYFSITLELPLTERALGNIG 1137
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 9492019 9497705 + Carg23733-RA Car06g01329 151065
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car06g01329 1137 Pfam His Kinase A (phospho-acceptor) domain 908 967 IPR003661 GO:0000155|GO:0007165
Car06g01329 1137 ProSiteProfiles PAS repeat profile. 762 814 IPR000014 -
Car06g01329 1137 ProSiteProfiles PAS repeat profile. 626 697 IPR000014 -
Car06g01329 1137 Pfam GAF domain 233 411 IPR003018 GO:0005515
Car06g01329 1137 MobiDBLite consensus disorder prediction 1 33 - -
Car06g01329 1137 Pfam PAS fold 84 200 IPR013654 GO:0006355
Car06g01329 1137 Pfam Phytochrome region 424 599 IPR013515 GO:0006355|GO:0009584
Car06g01329 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 401 IPR016132 -
Car06g01329 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Car06g01329 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1015 1126 IPR003594 -
Car06g01329 1137 ProSiteProfiles Histidine kinase domain profile. 910 1130 IPR005467 -
Car06g01329 1137 Pfam PAS fold 762 881 IPR013767 GO:0006355
Car06g01329 1137 Pfam PAS fold 629 745 IPR013767 GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car06g01329 Car14g01399 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01329 Car-Chr6:9492019 Car13g00449 Car-Chr13:6899041 0 dispersed
Car14g01399 Car-Chr14:11804661 Car06g01329 Car-Chr6:9492019 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01329 K12121 - csv:101212197 2080.83