Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01366 ATGGAGAAGGAGTTCTTCATGAACGATGGAAGCAGTTTTTATGGGATGGATTCGAGTGTGTTGTTCAATTCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCACACGCTGGGGCTGTAATAGGCGGGGGTAGTGGCGGCGGCGGCGGCGGCGACAACTTGATGATGCGAGAATTGATCGGTAGGCTTGGAAGTATTTGTAGTTCTGGTGAGATTTCACCTCATTCTTACATTGGTGGGACGAACAATAATAGTACCAATACTTCTTGTTACAATACGCCTTTGAATTCCCCTCCGATGAAAGGAAATTTATCTGTCGGTCACCATCAAAATCTGGCTCCATTTTCGGCTGATCCAGGTTTAGCTGAAAGGGGTGCGAGATTTTCTTGCTTTGGGAACAAGAATCTTGCAGTGAATGGGCAATTGTGTTCTAATGAAACTCAAGAATTGAGCAACAAGTCAATGGCTGGAGCTGGTGTGGAATCTGGCAAGCTTTCTAGGGTTTCAAGTAACAAATCCTTCAATGTTAGTGGAATTGGATCTCAAATGGGAGTTCAGAAGGGGAATTCTATGGCTAACAAGAAAGTTATGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAACGACGATTCGCGGGAGGGATCATCGGTTTCGGAGCAGATTACAGCTGGGGAATTAGGATTCAAAGTTAACACTAGGAAAAGGAAATCAGCTCAAACTGGTGAAGCAAAGAATGTGAAGGCTGCAGGGGAGAATCGTGAACCAAATGGCAAGAAAATCAAACCAGAGATGGATGCTGCAAAGGGGAAGGCTGAGGCAAAAGATGCAACTCAGAAACAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTACATCCATGTTAGAGCTAAAAGGGGTCAAGCTACAGATAGCCATAGTTTAGCTGAAAGAATCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGATAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTTCAATCTTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCTACTGTCAATCCAAGGATGGATTTTAACATGGAAACTCTTTTGCCAAAGGATATCTTCAAAGGTTCGAGTTCGTTACCGCATACGATTTACCCTATTGATTCGTCTGTGCCCACTTTTGCATATGAGTATCAATCTATGAACATTCCTCCTCTTCATAGTGATCAAACGCAGGGTGGATACCACGAAATGGGGAATGGAATCCAAATTTCCAAGTTTTGGGAGGATGAACTCCACAGTGTAGTTCAGATGGGTTATGGACAAACCCAGCTGCAGAATCCTCATGGTGAGATGAAAAGTGAATTGTGA 1446 43.43 MEKEFFMNDGSSFYGMDSSVLFNSNWENSMDQSDLFESTLSSIVSSPANSHAGAVIGGGSGGGGGGDNLMMRELIGRLGSICSSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPMKGNLSVGHHQNLAPFSADPGLAERGARFSCFGNKNLAVNGQLCSNETQELSNKSMAGAGVESGKLSRVSSNKSFNVSGIGSQMGVQKGNSMANKKVMNRFSRSSTPENDDSREGSSVSEQITAGELGFKVNTRKRKSAQTGEAKNVKAAGENREPNGKKIKPEMDAAKGKAEAKDATQKQNNDNSKPPEPPKDYIHVRAKRGQATDSHSLAERIRREKISKRMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGSSSLPHTIYPIDSSVPTFAYEYQSMNIPPLHSDQTQGGYHEMGNGIQISKFWEDELHSVVQMGYGQTQLQNPHGEMKSEL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9828555 9831492 - Carg15510-RA Car06g01366 151102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01366 481 MobiDBLite consensus disorder prediction 213 308 - -
Car06g01366 481 Pfam Helix-loop-helix DNA-binding domain 322 369 IPR011598 GO:0046983
Car06g01366 481 MobiDBLite consensus disorder prediction 244 294 - -
Car06g01366 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01366 Car-Chr6:9828555 Car17g01198 Car-Chr17:9166817 2.01E-84 dispersed
Car12g00674 Car-Chr12:4633152 Car06g01366 Car-Chr6:9828555 1.48E-48 dispersed
Car17g01144 Car-Chr17:8792189 Car06g01366 Car-Chr6:9828555 6.69E-22 dispersed
Car14g01350 Car-Chr14:11392293 Car06g01366 Car-Chr6:9828555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3759 PF00010 HLH 7.00E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01366 - - cmax:111470804 905.59