Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01372 ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATTGGTGGTGCTGATGGGCCTTCCTTTTCTGATGACACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACCTCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAAGCAAGATCAACTCCTACTTCAGGAATTGGAGCTGCAACTTCAAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTCAGGCACCAGCACAGCCAGTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGATCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACCTCATTATCTGCTCAATTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCCAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAATTTCAGCAACTACAAATCCACTCGCAGCAGCAGCAACAACAGCAACATTTTCAGTACCATCAGCTGCATCAGCTTCAGCAGCAACCAACGGGAGACATCAAAATGAAAGGACCGACTTCTTCTCCGAGTTCGAAAGACAACACATCAGATACGTCCTCTCCCTCTTGTTGA 1257 46.14 MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPSSKDNTSDTSSPSC 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9863981 9867747 - Carg15504-RA Car06g01372 151108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01372 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 293 IPR004827 GO:0003700|GO:0006355
Car06g01372 418 MobiDBLite consensus disorder prediction 387 418 - -
Car06g01372 418 MobiDBLite consensus disorder prediction 1 86 - -
Car06g01372 418 MobiDBLite consensus disorder prediction 151 173 - -
Car06g01372 418 Pfam bZIP transcription factor 232 286 IPR004827 GO:0003700|GO:0006355
Car06g01372 418 MobiDBLite consensus disorder prediction 11 70 - -
Car06g01372 418 MobiDBLite consensus disorder prediction 151 166 - -
Car06g01372 418 Coils Coil 248 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00101 Car-Chr4:554890 Car06g01372 Car-Chr6:9863981 4.30E-60 dispersed
Car04g00991 Car-Chr4:5708876 Car06g01372 Car-Chr6:9863981 8.13E-60 dispersed
Car06g01372 Car-Chr6:9863981 Car14g01342 Car-Chr14:11335555 0 dispersed
Car06g01370 Car-Chr6:9850774 Car06g01372 Car-Chr6:9863981 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3760 PF00170 bZIP_1 1.00E-08 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01372 - - cmax:111470876 744.577