Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01373 ATGGAGGTCGACGATCGCTTTGTGGAATTGAATACCAGGACCTGTGTGGTGTTGGGCGGTCGTGGATTTCTCGGCCGATCTCTCGTTCTCCGCCTCTTGAAACTCGCTAAGTGGAATGTTCGTATCGCTGATTCTGCTGAATCGCTTGAACTCGATCCCTCTGAGCAGGATTCTCTCCTCTCTGACGCGCTTGTCGCTGGCCGGGCTTCGTATTTCCATGTCGATGTTCGCAATAAGGATCAGATCGTTGCAGCTCTCAGTGGTTCTTCTGTTGTGTTTTATATGGACTATGAAGATTCACATTCAAATGATATTTATCTCTCATACATGTTTATAGTTCAAGGTGCCAAAAATGTCATTAATGCTTGTCGAGACTGCAAAGTAAGACGGCTAATATTCAACAGTTCAGCTGATGTAATTTTTGATGGTTCACGTGATATACAAAATGGAGAGGAACCATTGGCATACCCACGGAAATTTGAGGACATGTTGAGTGACCTAAAGGCTCAAGCTGAAGCACTCATCCTGTTTGCCAACGATATAGATGGACTTCTAACATGTGCACTTCGCCCAAGCAATGTTTTTGGGCCAGAAGACACACGACTAGTTCCTTTCGTGGTGAATCAGGCAAAATCTGGTTTGGCTAAGTTCATTATAGGGAATGGCGAAAACCTGTCTGACTTCACATTTGTTGAGAATGTGACCCATGCCCATATCTGTGCAGAGGAAGCACTTGATTTTCGAATGGTGTCTGTGGCTGGAAAGGCATTTTTCATCACCAATTTTAAGCCCATGAAGTTTTGGGAATTTATCTCTCTCATTTTGGGAGGCTTGGGTTACCGAAGGCCATCCGTAAAACTTCCCTTTAAGATGGTTTGGAATGTTCTCTTGTTTTTGAAATGGATACATGAAAAGTTTGGATTCAGTAGATATAATCATTCCACTTGGGCTCGTTACATTCAGCTAGCCACGTGCACTAGAACCTTTAACTGTGTTGCTGCACATAAACAACTTGGGTACTCTCCTATAGTCTCCATGGAAGAAGGCATCACACTAACCATTGAATCATTTTCACATTTGCGCAAAGAATTATCTCTTGCAAGTCTCACCGAATTTACCGAAGAATCAAAAGCCGATAAGCTGCTGGGTGGTGGAAGAGTTGCCGATATCTTGTTATGGCGAGAAGAGAAGAAGTCATTCACGTGTTTTCTTGCTTCGTTTCTATTGTTTTATTGGTTTTTTCTACGTGGAGGAACTTTTATATCATCGGTAGCTCAGCTTCTGTTGTGTATCGTTGTCGTCCTTTATGGATATGGCTTCATACCAACAAACATATATGGGTTTCCTGTCCAGAAATTATCTGCGACTATGTTTGGACCATCTGATACAGTAGTCAGAGATTCGATCATGGGCATAGCATGCTTGTGGAATAGAGGTGTACATAACGCAAGATCATTGGCCCGAGGAGAGGATTGGAATTATTTTTTTAAGGCCGTAACATTTCTTTACGTCCTCAAGCTGTTTCTCTCACGATCCTTGACTTTGCTGATAGGCATGGGACTGGTGTTTGCATTCACTGCATTCTTTGTGTATGAGCAATACGAAATCGAGATTGATGGATTTGCTAAGTTCCTTTTCATCAGCATCATGGAATTAAAGAGTGTACTTGCAAGTCATTTACCACCTCCATTGATGTCATCTCTCTGGTGTAACAAATTATCACATCAACCTAAAGAAGTTGCAATGTCAAAGCGTTAG 1758 42.26 MEVDDRFVELNTRTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSAESLELDPSEQDSLLSDALVAGRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVINACRDCKVRRLIFNSSADVIFDGSRDIQNGEEPLAYPRKFEDMLSDLKAQAEALILFANDIDGLLTCALRPSNVFGPEDTRLVPFVVNQAKSGLAKFIIGNGENLSDFTFVENVTHAHICAEEALDFRMVSVAGKAFFITNFKPMKFWEFISLILGGLGYRRPSVKLPFKMVWNVLLFLKWIHEKFGFSRYNHSTWARYIQLATCTRTFNCVAAHKQLGYSPIVSMEEGITLTIESFSHLRKELSLASLTEFTEESKADKLLGGGRVADILLWREEKKSFTCFLASFLLFYWFFLRGGTFISSVAQLLLCIVVVLYGYGFIPTNIYGFPVQKLSATMFGPSDTVVRDSIMGIACLWNRGVHNARSLARGEDWNYFFKAVTFLYVLKLFLSRSLTLLIGMGLVFAFTAFFVYEQYEIEIDGFAKFLFISIMELKSVLASHLPPPLMSSLWCNKLSHQPKEVAMSKR 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9869718 9876581 - Carg15503-RA Car06g01373 151109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01373 585 Pfam Reticulon 387 543 IPR003388 -
Car06g01373 585 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 288 IPR002225 GO:0003854|GO:0006694|GO:0016616
Car06g01373 585 ProSiteProfiles Reticulon domain profile. 387 585 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01373 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - csv:101212494 1000.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00887 Car-Chr5:8653008 Car06g01373 Car-Chr6:9869718 3.73E-137 dispersed
Car06g01373 Car-Chr6:9869718 Car09g00023 Car-Chr9:127346 2.37E-24 dispersed
Car06g01373 Car-Chr6:9869718 Car01g01607 Car-Chr1:13212374 1.12E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1274 . . . . . . . . . . . . Car06g01373 . Sed12g0690 . . Bhi01g01193 Tan10g1204 Cmetu06g2044 . Hepe05g1297 . Lcy11g1256 . . . . . . . . . . Cone11ag0658 . . . . . Blo07g00114 . . . . . Bma06g01439 . Cmo06g01612 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011479 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01373 Car_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car06g01373 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0