Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01377 ATGTACCAATCAACTTCCTCCTCTTCTTCCTCGCACAATTCCATGCCCTCCTCCCACGCCGGTGGTGGAGGCGGCGGCGCCGGTGGTGGAGGTCTCACTCGCTACGGTTCTGCACCTGGCTCTTTGCTGAATTCGGCGGTCGATTCTGTGATCGGGAAACGGCATCCGGACTCCGATGCGTTTCTCCGTACGCCGCCGTCGTTTGGCGGTCACTTCTTCTCCTCCGCTGAGTCTTCCGTTGTCGAATCCTCTCGGAAGGTTGTTCAATCGTCGTCTACTTCCGACGATCTGAAATCGTCGGCGGCGGCGGCGGCTGCCTTGCAACGGTCGTACGGAATCCACGATTTGGCGCTTGAGGATTTCTCTACGGCGAGAGATTTTAATAGCAATGGTGGCCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCTGAAGGAACCGGTGGGTTTTCATTGACAAGGGGAGGAGGAGGAGGAATTGGAAGGTTAAAGTCACAGCTGAGCTTCAGTGGTGGGCAGGATTCGGTGTCTCAAATGTCTTCCATGAGTGAAAGTGTTGTGGAGGGTAGCAGCTCCCATTCCTTTGCCCCCACAGCCTTTGCCATGGACTCTTGGGACACCTCCAACTCCATTGCCTTCGCTGCCCCTCATCCCAAACGATCCAAGCTTCTTCACTCCGACGGAGACTTTTTCACCGGTCTCGACTCTCAGTTTAGTCTACCGCAAACAAGTTTTGAAATGGCTACTGTAGAGAGGTTGCTTCAAATCCCAGAAGACTCCGTGCCTTGTAAGATTCGAGCCAAACGTGGCTGTGCCACTCATCCTCGCAGCATTGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCGAACATGGATAAGCAAACGAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCACATCAAAGGTCTTCAAAATCAAATCCAGAAACTTAACAAAGAAGTTGAGAATTGCACGTGTGGAAGCAAAGAATGCTCGTAA 1071 52.38 MYQSTSSSSSSHNSMPSSHAGGGGGGAGGGGLTRYGSAPGSLLNSAVDSVIGKRHPDSDAFLRTPPSFGGHFFSSAESSVVESSRKVVQSSSTSDDLKSSAAAAAALQRSYGIHDLALEDFSTARDFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEGTGGFSLTRGGGGGIGRLKSQLSFSGGQDSVSQMSSMSESVVEGSSSHSFAPTAFAMDSWDTSNSIAFAAPHPKRSKLLHSDGDFFTGLDSQFSLPQTSFEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9903653 9906052 + Carg15499-RA Car06g01377 151113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01377 356 MobiDBLite consensus disorder prediction 1 35 - -
Car06g01377 356 Coils Coil 324 351 - -
Car06g01377 356 Pfam Helix-loop-helix DNA-binding domain 289 335 IPR011598 GO:0046983
Car06g01377 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Car06g01377 356 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01377 Car-Chr6:9903653 Car10g00852 Car-Chr10:4906800 2.66E-45 dispersed
Car14g01337 Car-Chr14:11289619 Car06g01377 Car-Chr6:9903653 1.29E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3761 PF00010 HLH 9.50E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01377 - - bhj:120087044 434.491