Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01380 ATGGGCTCTGAAACAAACTCCGGTGAGTACCATATTCTCATGCTACCGTTCATGGCCCACGGCCATCTTATCCCCTTCCTCGAGCTCGCTAATTTCATCCACCGGAAATCCTCTGTTTTCACCATCACCATCGCCTGCACCCCCTCCAACATCCAATACCTCCGCTCCGCCGCCGCCGACTCCAAAATCCGCCTCGCCGAGCTCTACTACTCGAGCTCCGACCATGGCCTTCCGCCAAACACCGAGAGTACTGAGAATCTCCCTTTAAATCAAATCGACACCCTGTTTCATTCCTCCACCGCCCTCGAACTTCCCCTTCGGGAACTGATTTCCGACCTCGTCCAAAAGGAAGGCAACCCGCCGCTGTGTATAATCTCCGACGTGTTCTTAGGTTGGTCGGTGGCCGTCGCCAGAAGCTTCAACATTCCAGTTTTCAGTTTCACTACATGCGGTGCTTATGGAACTCTGGCTTACATCTCTCTCTGGTTGAATCTCCCCCACCGTTCATCTACCAGCGATGAGTTTTCTCTCCCGGGGTTCCCGGAAAGTAGCCGTTTCCACCGCTCCCAGCTCCACCGGTTCTTACTCGCCGCCGACGGCACCGATTCCTGGTCCAGATATTTCCGGCCGCAAATCTCCTATTCTTTGAGCTCAGATGGGTGGCTCTGTAACACCGTCGAAGAAGTCGAGTCATTCGGATTGAAACATTTGAGGGATTACATAAAATTGCCCGTCTGGGCAATTGGCCCGCTTCTCCTCCAAACCAGCTCCGGCGGCCGTCGCCGGTGGGGGAAAGAGAAAGATTCCGGCGTGGGTTTAGAAACTTGCATGAATTGGTTGAATTCCCACCGGAAAAATTCAGTTCTGTACATTTCCTTCGGATCCCAGAACACAATTACCGAGAGCCAGATGATGGAACTGGCTTACGGATTGGAGGAAAGCGGGAGTGCATTCATATGGGTGGTGAGGCCGCCATCGGGACACGACATGAAAACAGAGTTCAGAGCTCATCAATGGCTGCCTGAGCATTTCGAGGATCGAATGAAGGAGACGAATCGGGGATTGGTGATCAGAAATTGGGCACCCCAGTTGGAGATTCTAGCGCACGAATCGGTGGGAGCGTTTTTGAGCCATTGTGGATGGAATTCGACGGTGGAAAGCTTGAGCCAGGGAGTGCCGGTGATCGGGTGGCCGATGGCAGCAGAGCAGGCGTACAATTCAAAGATGCTGGTGGAGGAAATGGGGATCGGAGTGGAGCTGACGAGGGGGAAGGAGAGTGAGATTAAGAGAGGAAGAGTGAAGGAGGTGATAGAAATGGTGATGGGGGAAGGTGGGGAAGGGGAAGAGATGAGGAACAAGGCCGCCATTGTTAAGGACAAGATGAGAGCCGCAGTTATGGATGAACATAAGGGTTCCTCTAACACCAACTTGGTGGACTATCTTGAATTCATTCAAGCCAAACAGAAGAGTCTAAACAAAATCAAATAA 1488 52.28 MGSETNSGEYHILMLPFMAHGHLIPFLELANFIHRKSSVFTITIACTPSNIQYLRSAAADSKIRLAELYYSSSDHGLPPNTESTENLPLNQIDTLFHSSTALELPLRELISDLVQKEGNPPLCIISDVFLGWSVAVARSFNIPVFSFTTCGAYGTLAYISLWLNLPHRSSTSDEFSLPGFPESSRFHRSQLHRFLLAADGTDSWSRYFRPQISYSLSSDGWLCNTVEEVESFGLKHLRDYIKLPVWAIGPLLLQTSSGGRRRWGKEKDSGVGLETCMNWLNSHRKNSVLYISFGSQNTITESQMMELAYGLEESGSAFIWVVRPPSGHDMKTEFRAHQWLPEHFEDRMKETNRGLVIRNWAPQLEILAHESVGAFLSHCGWNSTVESLSQGVPVIGWPMAAEQAYNSKMLVEEMGIGVELTRGKESEIKRGRVKEVIEMVMGEGGEGEEMRNKAAIVKDKMRAAVMDEHKGSSNTNLVDYLEFIQAKQKSLNKIK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9918564 9920051 - Carg15496-RA Car06g01380 151116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01380 495 ProSitePatterns UDP-glycosyltransferases signature. 360 403 IPR035595 -
Car06g01380 495 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 278 421 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01380 - - - csv:101206336 766.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01380 Car14g01333 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01623 Car-Chr4:9369453 Car06g01380 Car-Chr6:9918564 1.39E-61 dispersed
Car04g02436 Car-Chr4:19418484 Car06g01380 Car-Chr6:9918564 6.41E-50 dispersed
Car06g01380 Car-Chr6:9918564 Car04g01486 Car-Chr4:8651086 8.53E-60 dispersed
Car02g01015 Car-Chr2:7153968 Car06g01380 Car-Chr6:9918564 2.82E-133 transposed
Car14g01333 Car-Chr14:11276085 Car06g01380 Car-Chr6:9918564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1102 . . Bda03g00986 . . . . . . . . Cma14g01510 Car06g01380 Car14g01333 . . . Bhi01g02615 . . . . . Lcy11g1245 . . . . . . . . . . . . . . . . Blo07g00109 . . . Bpe13g00726 . Bma06g01434 . . Cmo14g01543 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008183 1 1 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01380 Car_Chr06 FPKM 18.579535 19.745014 22.161034 22.02235 25.345446 26.061909 25.223783 7.314686 6.698183 6.035112
Car06g01380 Car_Chr00 FPKM 13.292425 14.860346 20.554155 21.683554 24.555229 22.705793 23.988905 5.625468 4.661294 4.560945