Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01388 ATGAAGAAGGCCTTCGATCAAACTGTTAGGGACTTAAAGCGAGAGGTCAATAAGACCGTGCTCAAAATTCCGAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAACGAGCCTTGGGGTCCTCATGGATCACTTCTTGCAGATATAGCACAGGCAACTCGAAATTATCATGAATATCAAATGATTATGGGAGTAATCTGGAAGCGGATTAACGATACTGGCAAGAATTGGAGGCATGTTTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCACGGGTCGGAGCGTGTCATAGATGACATTAGAGAACATGTCTATCAGATATCGACCTTATCTAATTTTCAATACATCGACTCGAGCGGGAGGGATCAGGGTAACAATGTTAGAAAGAAATCGCAAAATCTTGTTGCCCTTGTAAATGATAAAGAGAGGATTGTTGAGGTCAGACAGAAAGCTGCTGCTAATAAGGACAAGTTTCACAGTGCAGCATCTATGGGCAGTATGTATAGACCAAGTGCAGGAGCATATGACGACCGCTATGAAGGAAGATATGGAAGCCGTGATGGAGACCGAAATGTTGATTCTTATGGGAGGGAAAGAGAATATGGTTTTAGAGATGAACGTTCCGGTGGAAATGAGGATTCATATGGTCGTGATTATGAAGACCGCTATAATAGAGATGGTTATAGGGATGATGATTATCGAGGAAGAAGCCGAAGCGTTGATGACTATCAGTATGGTTCAAGGAGCCGGAGCTCTGACAGAAATGGAGAACGTACATATGACGATGGTCAAGTTTCTTCTCGCAACAACGATACTAGAGCGAACGAGCCATCTCGGGATGAAAGGCCGCTTGAACGTAAATTTTCGGAACAGAATATTGGTGCTCCACCTAGTTACGAAGAAGTTGTGACTGAATCTGAAAGCAATGTGCAAAGTCAAAGAGATGTTGAAGCTCCACCAACTGCTGCTCCGAGAGCGTTTCCCCCACCCACATCCAGTACTCAAAGCCAGCTAACTAGTCATGGAACTGCTGCATCCCCACCTACTCAGGGGCTTGATGGTTCTGATGAATTCGATCCTCGTGGTTCAGTTCCAGCTGCTCCACCTGCCTCAAGCAGTTTAGAGACAAATTTATTAGACTCATTGGCCTTAGTGCCTGTTGGGCCAGTAACATCAACTGCGGACTATGAGGGTCATGTTCAGACAAGCTCTGCTGTGGGATACCATGCTCAAAATCAGACTTTCGAAGACGCATTCGGTGACTCGCCTTTTAAAGCCATTTCTTCCTCTGATGTCCAAGATCAAGCACATGTCCAGCATGGGGAATCATTTTCTGTAGCAACTTATTCCACACCGAACATCCCCGTTCAACCCCAACCGAATTTTCCGCAGCCTCGTGAAGAGTCTCTGCAACATCAAAATATTGGCGTACTAGCTGATCTCCTTCCTCCTCCTGAACCTTTACCTGCTGTTGTTTCACAGCCTGCATTCACAGTATCAAACAGCCAACAAGCTGTATCTGGCTTGCCTGCACAGCCAAATTCTAATAACTTGGGGACTTATCAGCAACATGGAAACGTAGCTCCCGTAAATTTTCAAAATCCAACAGAACCCGGGAGAGAGTTTAACAACGGGATGTTCATGGTTCCGGGAAGTGCACCGACACATGTCAATTCATATATGGTTCCTCCAAATGCTGGACCTAGTACACATCCCAACAATTTTGGATATTCTCAGGATGGTTCGGTAGCTCCCACGAGTTCTCATGTCGCACTTCAAACTACTCAACCGCCTGCTCAGCTTCCTAGTGGGAACTTCAATCCGCCACACGCCTCTGTAGCTCCAGTAGCTTCTCATGTGTCTTACCAAGCTCCTAATTTTCCTGTTAACGTATCTAACCCTGATGTTATGGGTAGTTTTCAAGCAGGAAACTATACATCCATGGCTTCCCAGCAAATTCCTCCATCTGGATCGCTTTCAAATGCATCTCAACCTTCAAAGAACAAGTTCGAGACCAAGTCTACAGTATGGACCGACACATTAAACCGAGGGCTTGTCAATTTAAACATATCTGGACCTAAAACAAACCCATTGGCGGATATTGGTGTTGATTTTGAAGCCCTCAATAGGAAAGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGCGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCCGGGATTGGCCGAGCCGGTGCGAGTGCACTAAGGCCACCTCCAAACGCAATGTCGGGTCCGGGAATGGGAATGGGTATGAACCCCAACCCTGGCATGGGCATGGGTATGAGAGGAGGATATGGAGGCATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGTATGGCACAACACGGAATCCAGATGCAGCAGCCTCCAGCGAACATGCCTGGTGCATACAACCCAATGATGGGTGCTGGTGGCTACGCCCCTCAACAGCCACCGTACGGCGGCTACCGATGA 2502 46.72 MKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGVIWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHVYQISTLSNFQYIDSSGRDQGNNVRKKSQNLVALVNDKERIVEVRQKAAANKDKFHSAASMGSMYRPSAGAYDDRYEGRYGSRDGDRNVDSYGREREYGFRDERSGGNEDSYGRDYEDRYNRDGYRDDDYRGRSRSVDDYQYGSRSRSSDRNGERTYDDGQVSSRNNDTRANEPSRDERPLERKFSEQNIGAPPSYEEVVTESESNVQSQRDVEAPPTAAPRAFPPPTSSTQSQLTSHGTAASPPTQGLDGSDEFDPRGSVPAAPPASSSLETNLLDSLALVPVGPVTSTADYEGHVQTSSAVGYHAQNQTFEDAFGDSPFKAISSSDVQDQAHVQHGESFSVATYSTPNIPVQPQPNFPQPREESLQHQNIGVLADLLPPPEPLPAVVSQPAFTVSNSQQAVSGLPAQPNSNNLGTYQQHGNVAPVNFQNPTEPGREFNNGMFMVPGSAPTHVNSYMVPPNAGPSTHPNNFGYSQDGSVAPTSSHVALQTTQPPAQLPSGNFNPPHASVAPVASHVSYQAPNFPVNVSNPDVMGSFQAGNYTSMASQQIPPSGSLSNASQPSKNKFETKSTVWTDTLNRGLVNLNISGPKTNPLADIGVDFEALNRKEKRMEKPSTAPAISTINMGKAMGSGSGIGRAGASALRPPPNAMSGPGMGMGMNPNPGMGMGMRGGYGGMNQPMGGMGMNMGMAQHGIQMQQPPANMPGAYNPMMGAGGYAPQQPPYGGYR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9979136 9986734 + Carg15488-RA Car06g01388 151124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01388 833 MobiDBLite consensus disorder prediction 650 669 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 304 318 - -
Car06g01388 833 Pfam ENTH domain 25 146 IPR013809 -
Car06g01388 833 MobiDBLite consensus disorder prediction 275 290 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 577 599 - -
Car06g01388 833 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Car06g01388 833 MobiDBLite consensus disorder prediction 168 375 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 451 472 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 177 263 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 505 527 - -
Car06g01388 833 MobiDBLite consensus disorder prediction 330 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01388 K12471 EPN; epsin - csv:101208671 1141.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01388 Car08g00073 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00096 Car-Chr5:491334 Car06g01388 Car-Chr6:9979136 1.15E-13 dispersed
Car06g01388 Car-Chr6:9979136 Car08g00073 Car-Chr8:428200 4.78E-50 dispersed
Car14g01330 Car-Chr14:11246969 Car06g01388 Car-Chr6:9979136 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01388 Car_Chr06 FPKM 7.086267 6.48541 1.15549 0.978542 13.014998 14.003096 13.495082 0.061601 0.0 0.088004
Car06g01388 Car_Chr00 FPKM 6.211657 5.858657 1.547459 1.470483 14.237477 14.80084 15.00191 0.154572 0.0 0.183072