Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01390 ATGGACGGTCGAGATCATCGTCGTTTTGGTTTAGTGGCGCATGCCCCTCCTCCTGGTTACTTCATACGTTTGAACAATACTGGACCGAAAGACGATTTATATCTAAGTAAAAGGGATAGAATGCGCAGGTGGCTTTGTTGTGCTTGTCAAGTTGAAGAACCCTACTCATCAGCTGAAAGTGAGCACCTAAAAAGCCCAGGAAGTTACGGAGATGGTGGTCACCAAAAGGTCTCAAAAGAGCCAGCTTCTCACAAATCTGAAGCACCAAAAGCTCCACCTCCCATAGATGTTCCAGCGTTGTCTCTGGAAGAATTGAAAGAAAAGACTGACAACTTCGGGTCCAAGGCATTGATTGGTGAAGGGTCTTACGGTCGAGTTTATTATGCTAGATTAAACGATGGGAAAACTGTGGCAGTAAAGAAGCTGGATGTATCCTCCGAGCCTGACTCGAGTGTCGACTTTTTGACTCAGGTTTCTACAGTCTCAAGGTTGAAACATGAAAATTTTGTTGAGTTGCACGGATACTGCGTTGAAGGAAATCTCCGTGTTCTTGCATATGAGTTTGCAACTATGGGTTCTCTACATGACGTATTGCACGGTAGAAAGGGAGTACAAGGGGCACAGCCTGGTCCAGTGCTCGATTGGATGCAACGTGTGAGAATCGCTGTCGATGCAGCTAGAGGATTGGAGTACTTGCATGAGAAGGTTCAACCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTTGAAGAGTATAAAACAAAGATTGCAGACTTTAACCTTTCTAACCAAGCTCCGGACATGGCTGCACGACTTCATTCTACTCGAGTTTTAGGAACTTTTGGCTATCATGCTCCAGAGTATGCTATGACAGGACAATTGACACAAAAGAGCGATGTCTACAGCTTTGGAGTCGTTCTACTCGAGCTTTTGACTGGGAGGAAACCCGTTGATCACACCATGCCTCGCGGGCAGCAGAGTCTTGTTACTTGGGCTACTCCAAGGCTAAGTGAAGACAAAGTTAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCACCTAAAGGAGTCGCCAAGCTGGCTGCTGTGGCAGCACTGTGTGTGCAATATGAAGCCGAGTTCAGGCCGAACATGAGCATTGTCGTCAAGGCTCTCCAGCCGCTTCTAAAGCCACCTACGCCTATGCCTGCATCGTCTCCTGAACCTTGA 1224 46.49 MDGRDHRRFGLVAHAPPPGYFIRLNNTGPKDDLYLSKRDRMRRWLCCACQVEEPYSSAESEHLKSPGSYGDGGHQKVSKEPASHKSEAPKAPPPIDVPALSLEELKEKTDNFGSKALIGEGSYGRVYYARLNDGKTVAVKKLDVSSEPDSSVDFLTQVSTVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEEYKTKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPTPMPASSPEP 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9994531 9998232 - Carg15486-RA Car06g01390 151126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01390 407 MobiDBLite consensus disorder prediction 57 97 - -
Car06g01390 407 Pfam Protein tyrosine and serine/threonine kinase 117 390 IPR001245 GO:0004672|GO:0006468
Car06g01390 407 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Car06g01390 407 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01390 407 ProSitePatterns Tyrosine protein kinases specific active-site signature. 240 252 IPR008266 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01390 Car08g00069 CCT
Car06g01390 Car14g01325 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01390 Car-Chr6:9994531 Car17g00545 Car-Chr17:5071048 0 dispersed
Car14g00873 Car-Chr14:5159412 Car06g01390 Car-Chr6:9994531 2.88E-44 dispersed
Car14g01325 Car-Chr14:11207128 Car06g01390 Car-Chr6:9994531 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88959 PF07714 PK_Tyr_Ser-Thr 2.70E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01390 K13436 - csv:101215403 728.783