Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01397 ATGGATGGAGCAGAACCATACATAGGCATGGAGTTTGGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTCGGATTCACCGTTCGAATACATCATAATCGACGTTCCCGTGTCAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTCCGAGCTAAGAAGTATGTATCCAGAAAAGATAGGATACTTCCAGCCCCACCTATTACACGAGAGGGATGTCAAGCAATGATAAGATTAGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCATAATCATCTCTTGCTGAGTCCTAGTAAAGTTCCATGGCGCGGATCTGGAAAAAACTTGCTCACTGAGGATGAGAAGGATAAGAGGATTCGAGAATTGTCGCTCGAGTTGTACAATGAGAAGCAGAAATGTAAGAGAAAATGTGCAGCATATGAAGAACAATTGAAAGCAGTCTTGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTGAAGAGCATTAGAGAAGTTGAAGATGAAGAACACTCAGGAGGTTTGAATCAAGGTTGGGTTTAG 606 40.92 MDGAEPYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVSRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLLTEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIREVEDEEHSGGLNQGWV 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10040427 10043145 + Carg15479-RA Car06g01397 151133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01397 201 Coils Coil 145 165 - -
Car06g01397 201 Pfam FAR1 DNA-binding domain 20 110 IPR004330 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01397 - - - bhj:120088768 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01397 Car-Chr6:10040427 Car17g01226 Car-Chr17:9331321 5.18E-44 dispersed
Car06g01397 Car-Chr6:10040427 Car14g00407 Car-Chr14:2066263 8.58E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1214 . . . . . . . . . . Cma06g01644 Cma14g01501 Car06g01397 . . Cpe08g00086 Cpe03g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01646 Cmo14g01537 . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013506 1 2 1 0 0 1 1 0 0 1 0 1 1 0 1 1 0 0 1 0 1 1 1 1 1 0 1 3 2 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3764 PF03101 FAR1 1.50E-26 CL0274 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01397 Car_Chr06 FPKM 26.261204 23.903929 2.505676 2.48458 0.535604 0.619297 0.598865 0.223059 0.440951 0.292757
Car06g01397 Car_Chr00 FPKM 26.226727 24.188698 2.445236 2.431094 0.532209 0.543069 0.59602 0.222198 0.439402 0.283595
Car06g01397 Car_Chr00 FPKM 37.170673 39.049152 5.150487 7.078527 1.572953 1.370712 0.864007 0.858182 1.564238 0.99199