Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01400 ATGCATCGTTTCAGTTTATCGATCGTATTCTTCCAATTTTTCCTCTTCTTTCCTTCAAGAATTTCAGCGATCAGGAATCATATAGGCTTAGCAGTAAAGAACACGTGTAGGAGCACTGTTCAGGGAAGATATTTACTGACCGATGATAATGGTCGTGTATGTGATGCTTTATCTATTGATCCACTATCTCATTGCTGCCTTGGCAAAGGGGACAAATTTCCTTTGGGTGCAATCTTGTTTCACAATGTTGCAATTCGGACATATGCCAGTGTCTTTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGTGTTGTGCATGAAAATGCTTATCACAGTGATTACCATCATTGCTTTTCCCTGCCATCATATTCTTCAGGAGTGAGCAGCACACAACTAGAATTCAGACTGAATGGCATCAATGTCATTGTTGGAAGGTCAGGACAAGGAGAATCATGTGATTCAGTTTGCAAGTCAAATGGACAATCATGCGTCTCAAACAAGATTTTGGTCCTAAATCATTGTGACATAATACAAAAATACATGAGCTGCAAAGGAGGTTGCATAGAAAGTGTTGGGCCTGATCACCCTGCTGAAGTTGCTTATAATGCTCCTGAAGAACTGAATCCAGGAGCATGCTTATATAGTAGCGCACAGTCAATACTTACTTGTGATGGCTCACACCCACATACCATGAGACTTTGCCCTTGTGCGTAG 720 41.39 MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSIDPLSHCCLGKGDKFPLGAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEELNPGACLYSSAQSILTCDGSHPHTMRLCPCA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10052284 10054762 - Carg15476-RA Car06g01400 151136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01400 239 Pfam SREBP regulating gene protein 83 120 IPR019352 GO:2000640
Car06g01400 239 Pfam SREBP regulating gene protein 33 67 IPR019352 GO:2000640
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01400 - - - mcha:111014633 370.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01400 Car14g01312 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01312 Car-Chr14:11130849 Car06g01400 Car-Chr6:10052284 1.67E-38 transposed
Car14g01309 Car-Chr14:11102363 Car06g01400 Car-Chr6:10052284 4.21E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1206 . . . . . . . . . . Cma06g01649 Cma14g01474 Car06g01400 Car14g01312 Sed12g0636 Cpe08g00084 Cpe03g01242 Bhi01g02686 Tan10g1282 Cmetu07g1873 . Hepe05g1237 . . . . . . . . . . . . Cone11ag0619 . . . Cme07g01887 . . Bda11g00453 . . Bpe13g00742 . . . Cmo06g01651 Cmo14g01511 . . . . . . . . . . . . . Cla07g01492 Cam07g1588 Cec07g1686 Cco07g1649 Clacu07g1579 Cmu07g1547 Cre07g1924 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006289 1 2 0 0 1 1 3 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01400 Car_Chr06 FPKM 3.810466 2.617527 0.233301 0.549801 6.893101 6.259164 5.74051 0.304258 0.706366 0.616876
Car06g01400 Car_Chr00 FPKM 3.223844 2.354288 0.0 0.418356 5.813359 5.042476 4.757137 0.203373 0.612938 0.489746