Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01427 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGCCTCACTTCTCTTACATCCAAGCGTCGCAAGGCAGATTTTTCTATCTCCTCTAAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGATGGAGTTGCCATACAACCACGGCCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGA 507 46.15 MIASSLCNASAKFPAEVVEVETMMEQKRNLCSVDESSLTSLTSKRRKADFSISSKEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTISPFN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10174160 10178188 - Carg15448-RA Car06g01427 151163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01427 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Car06g01427 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 109 IPR036638 GO:0046983
Car06g01427 168 Gene3D - 41 117 IPR036638 GO:0046983
Car06g01427 168 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Car06g01427 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 152 - -
Car06g01427 168 SMART finulus 53 100 IPR011598 GO:0046983
Car06g01427 168 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 17 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01427 Car-Chr6:10174160 Car07g00245 Car-Chr7:1335063 9.61E-32 dispersed
Car14g01267 Car-Chr14:10890305 Car06g01427 Car-Chr6:10174160 3.39E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01427 - - cmax:111470730 327.405