Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01428 AAAAAGAAAAAATGGAGGTTGGTTCGACGTGAAAAGAAATGCCGGTTCCAATTTCTTCCATTGGAACACACGGATGACCTTTCCCAGCCCTTCCAGGACTACCTCAGCAGCAGTTCTTCCTCGACATTTGCTATGACTTCTTCAATTCTCCTCCACTCCGAATTCAGGCCCCAAATGGTGATCCCTATGGCCCTCGATTTCCTCCTCCCTTCCTGGTTGGAAATCAAGATCACACTCGCCACTTCCCTTTTCGTGATCTTCGCTTACTGGTTTTTCGCCTACCGGAGCTCCTTCTTTGATGGTGATCCTTCTGTTCTTGACAATTCTGGGGATTCTATTGACGCTAAGGACAAGATTCCTCCTGGCCATTTGAGAGACCTTCAGACTAATTCTGCTTATCTAATTAAGTTGGAATTGTTGGCTGCCAAGAATCTTATTGCTGCAAACTTAAATGGCACTTCTGATCCTTATGCTATTATTACCTGTGGTACAGAAAAGCGCTTCAGTTCAATGATTCCTGGTTCAAGGAATCCCATGTGGGGGGAGGAGTTCGATTTTTCCGTCGATGAGCTTCCTGCCCAGATTAATGTTACAATTTATGATTGGGATATAGTTTGGAAAAGTGCTGTTCTTGGTTCAGTTACTGTTACGGTTGAAAGTGAAGGCCACACAGGTGCTGTATGGTACACATTAGATAGCACTTCCGGGCAGGTCTGTCTCCACATTAAAACTTTAAAATTGCAAGGCAATGGCGGAAGCGCAATTAATGGTTATGCTGGAGCAAATGCTCGAAGAAGAATTTCTTTAGACAAACCAGAGCTGACAGTGGTTCATCAAAAGCCAGGGCCTCTTCAGACGATCTTTGAGCTTCTACCTGATGAGGTAGTCGAGCATAGTTTTTCGTGTGCTCTTGAGAGATCATTCTTGTATCACGGTCGTATGTATGTCTCAGCTTGGCACATCTGCTTCCACTCTAACATCTTCTCCAAGCAAATGAAGGTGATAATACCACTAGAAGACATTGATGAAGTACGAAGGACTCAACATGCATTTATCAATCCTGCTGTAACAATTATTCTTCGTATGGGTGCTGGTGGGCATGGTGTACCTCCGTTGGGAAGTCCTGATGGTAGAGTCAGATATAAATTTGCATCATTTTGGAATAGGAACCATACAGTTAGAGCTTTACAGCGTGCAGTGAAGAACTTCCGTGAAACGCTGGAAGCTGAGAAGAAGGAGAAGGCTGAGTCAGCACTACGCGCACATAGTAGCTCGGTGAGAGTTAGTGAAAGTACGGAGAAAATCGCTGCGGATAATTTGCCGAAAAATAAAAATACTCAGGCTTTCATTAAAGAGGAGGTCCTTACTAGCATACACAACGGTGTTTTCCCATGCACTCCCGAGCAGTTCTTTACTATTTTGTTGAGTGATGGATCAAATTACACAAGTGCTTTTGTTGCAAGACGAAAAGATACAAATCTAGTTATGGGACAATGGCATGCCGCAGATGAATATGAAGGTCATGTTAGAGAGCTTACATATAGATCCCTGTGTCATAGCCCCATGTGCCCACCAGACACAGCGATGACAGAGTATCAACATGCAGTTTTATCTGAAGATAAGACTAAGCTGGTGTTTGAGATGGTGCAAAACGCGCATGATGTGCCGTTTGGGGCGTACTTTGAGCTCCATTGTAGGTGGTCGTTGGAGACAAATGCTGAGAACTCTTCTTCCATTGAGATTAAAGCAGGTGTACATTTTAAGAAATGGTGTCTGATGCAATCTAAAATAAAGGCTGGCGCAATGCTTGAGTACAAGCGAGCGGTGGAGCTGAGGTTAGAGGTCGCCCTCGAATATACGAAGTCAAATGCTCCTGGCAGCGAAAATGACAAAATTGCACCTCCTCCACCACCAGCTCAGAGCACTTGA 1929 44.32 KKKKWRLVRREKKCRFQFLPLEHTDDLSQPFQDYLSSSSSSTFAMTSSILLHSEFRPQMVIPMALDFLLPSWLEIKITLATSLFVIFAYWFFAYRSSFFDGDPSVLDNSGDSIDAKDKIPPGHLRDLQTNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFDFSVDELPAQINVTIYDWDIVWKSAVLGSVTVTVESEGHTGAVWYTLDSTSGQVCLHIKTLKLQGNGGSAINGYAGANARRRISLDKPELTVVHQKPGPLQTIFELLPDEVVEHSFSCALERSFLYHGRMYVSAWHICFHSNIFSKQMKVIIPLEDIDEVRRTQHAFINPAVTIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTVRALQRAVKNFRETLEAEKKEKAESALRAHSSSVRVSESTEKIAADNLPKNKNTQAFIKEEVLTSIHNGVFPCTPEQFFTILLSDGSNYTSAFVARRKDTNLVMGQWHAADEYEGHVRELTYRSLCHSPMCPPDTAMTEYQHAVLSEDKTKLVFEMVQNAHDVPFGAYFELHCRWSLETNAENSSSIEIKAGVHFKKWCLMQSKIKAGAMLEYKRAVELRLEVALEYTKSNAPGSENDKIAPPPPPAQST 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10181699 10190105 - Carg15447-RA Car06g01428 151164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01428 642 Coils Coil 393 413 - -
Car06g01428 642 ProSiteProfiles C2 domain profile. 116 231 IPR000008 -
Car06g01428 642 MobiDBLite consensus disorder prediction 622 642 - -
Car06g01428 642 Pfam GRAM domain 285 349 IPR004182 -
Car06g01428 642 Pfam C2 domain 136 231 IPR000008 -
Car06g01428 642 ProSiteProfiles VASt domain profile. 451 624 IPR031968 -
Car06g01428 642 Pfam VAD1 Analog of StAR-related lipid transfer domain 460 602 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01428 - - - bhj:120082742 1044.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01428 Car14g01266 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01428 Car-Chr6:10181699 Car18g00587 Car-Chr18:6933034 7.34E-13 dispersed
Car06g00783 Car-Chr6:6040556 Car06g01428 Car-Chr6:10181699 5.53E-18 transposed
Car14g01266 Car-Chr14:10879778 Car06g01428 Car-Chr6:10181699 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01428 Car_Chr06 FPKM 9.189333 7.845601 0.0 0.0 7.672742 9.383389 10.893022 2.734547 4.775641 3.283834