Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01440 ATGAAGAACACTGGCATTAACACTCTCGGCGGCGAAGATCGACAAACAAAAGACAATACGATCTCAGGTCTCGATTCCCGATTCAATCAGACCCTCAGAAATGTTCAAGGGCTGCTGAAAGGCCGCAGTATTCCTGGAAAAGTATTGCTCACTAGAAGATCAGACGTGATCGACCCCTCGAGCGTATCAGAAAAATCATCAAATTATTCGAGGAGCTTGTCGCATAATGATATTGGTACAAGCAACCGCATTGCCAAATCTGAGGAGGAAGATATTCAGATTATGAATAATAATACAATTGTTAGTAAGTCTAAATCTTCAACCTCCAACACCGAGGATCTTGCTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCCTGAAGTTCACAAAGTTGCTATCAGGAACAACAATCATATCAGACAAGTTGCGTGAGCTAGCTTGGAGTGGTGTTCCGCCATATATGCGCCCAAATATATGGAGACTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAATATCTTGACAGCGTTGCACAATTCTATGACATTCCTGATACTGAACGGTCTGACGATGAGATAAACATGCTCCGCCAGATTGCTGTTGATTGCCCTAGAACCGTACCTGATGTTACTTTCTTTCAACAAGCACAAGTTCAGAAATCTTTGGAGCGTATTCTCTATACTTGGGCTATTCGACATCCTGCGAGCGGATATGTTCAAGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCCATCTCTGATCTATCTCCTGACAAGATCACAAACATCGAGGCAGATTGCTACTGGTGTCTATCGAAATTACTTGATGGTATGCAAGATCATTATACGTTTGCCCAACCGGGAATTCAGCGGCTTGTATTTAAGTTGAAAGAACTGGTTAGGAGGATTGATGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTCGCTTTTCGGTGGTTCAACTGTCTTCTGATACGGGAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGACTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTTTTGACGTGGTCTGAAGAGCTGCAGAAACTTGATTTCCAAGAACTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACCCATCAAGAACTTGAGATGGTGCTTTCAAGAGCATACATATGGCACAGTATGTTCAACAATTCACCCAGACACCTTGTTAGCTGA 1365 42.64 MKNTGINTLGGEDRQTKDNTISGLDSRFNQTLRNVQGLLKGRSIPGKVLLTRRSDVIDPSSVSEKSSNYSRSLSHNDIGTSNRIAKSEEEDIQIMNNNTIVSKSKSSTSNTEDLAKEVQKPIMGARATDSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAYIWHSMFNNSPRHLVS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10239775 10243925 - Carg15435-RA Car06g01440 151176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01440 454 MobiDBLite consensus disorder prediction 1 24 - -
Car06g01440 454 Gene3D - 319 454 - -
Car06g01440 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 11 451 - -
Car06g01440 454 Pfam Rab-GTPase-TBC domain 162 406 IPR000195 -
Car06g01440 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 196 318 - -
Car06g01440 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Car06g01440 454 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 11 451 - -
Car06g01440 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 344 IPR035969 -
Car06g01440 454 SMART tbc_4 154 410 IPR000195 -
Car06g01440 454 Gene3D - 135 185 - -
Car06g01440 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01440 K20360 TBC1D22, GYP1; TBC1 domain family member 2 - csv:101220794 844.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01440 Car17g00072 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01440 Car-Chr6:10239775 Car17g00072 Car-Chr17:418096 3.19E-31 dispersed
Car20g00567 Car-Chr20:3198754 Car06g01440 Car-Chr6:10239775 2.22E-11 dispersed
Car06g01440 Car-Chr6:10239775 Car06g01443 Car-Chr6:10272670 1.36E-12 proximal
Car14g01255 Car-Chr14:10820203 Car06g01440 Car-Chr6:10239775 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01440 Car_Chr06 FPKM 83.667488 92.973137 15.716079 17.010836 47.558334 47.437386 47.450241 66.295029 65.080971 67.78936