Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01442 ATGGAAAACCCCTTTTCGTCCAAGGAGGAAGGGATGATGGGGTATTGGGGACCTTCCAGAACTCAGGCCGAAACTATGAATTCCACTGACGCTGGAATGAGGATTTTGAGTCCTGAAGATGTCCTCCCCACCTTCTCTGACATGATGAATTTTGATTCTTATGCGGCAATCGATCAGATTTTCACATCTTGTGGGTTTTCATCGATGCCCCAAATGAGTACTTGCGGTTCTATCGAGGGCTTGTCTTTTGTTGAAGGGGGGTGCCATGAAGGATTCCCTCTGAATGAACATGGTGGAGCTTCCATTTCCATGGCGAATTCTTTTACTTGTGGGGACAAGGTGATGTTTCAGCTGCCAGACACTGAATTTGGGGTGTCTAGTGTTTCGGACAACGCAAACAAAGTAGATTCTAAATCAAATGATGTCCCTGTAGACATGGATAGCTGTCTGATCTCTAGGCCGTTTGGTTGGTCACTTGATGAGAAAATGCTGAGGGTTTTATCCATGTTTAAAGAGTCATCACCTGGAGGTATTTTGGCTCAAGTCTGGGTTCCTGTGAAGCATGGAGACCAATTCTTCTTGAGCACCAGCGAGCAGCCATATTTGCTTGATCAAATGCTCACAGGGTACCGTGAAGTGTCGAGGTCGTTTAGATTCTCAGCAGAAGGAAAACTGGGTTCTCTCCTTGGGCTTCCTGGTCGTGTTTTCACCTCCAAACTCCCAGAATGGACATCAAATGTTAGATATTACAGTGACCACGAGTATCTGAGAATGCAACATGCAATCGGCCATGATGTTTATGGATCGATTGCCTTACCGGTATTCAATAACGAAGTCGAAAAATCATGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGCCCAATTTTGATGCAGAAATCGACATTGTTTCCCAAGCACTAGAGACTGTTAGCTTGAGCACTGTTCCGCCTCCTCGACTATATTCGCAGTGCTTGAAGAAGAACCAGAGAGCTGCATTGGCGGAGATAGTGGACGTGCTACGTGCTGTATGTCATGCACATAGACTACCTCTTGCCCTAACCTGGATTCCTTGTTGTTATTCTTTCGACGCCGTTGATGAGGTTGCAAGAGTTCGTGTTAAGGAGAACAACATTAACCCAGAGGAGAAATTTGTATTATGTATCGAGGAAACAGCATGTTATGTGAATGACAAATCAACTCAAGGATTTGTGCATGCTTGTCTGGAGCATCATCTTGAAGAAGGGCAAGGGATAGCTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATGATATTAATAAATATCCGCTGGTCCATCACGCACGCAAGTTCGGTTTGAATGCTGCGGTTGCAATCAGGCTGAGAAGCATGTACACTGGCAACGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAGCTGCAGAACAACAACTATTGTTAAACAATCTCTCTGTTACCATGCAAAGAATGTGCAGGAGTTTGAGGACAGTTTCAAAGGAAGAATTAATAGGGGCTGAGGATTCTGTTGTTGACTTTCAGAGTGGATTTACATCAATGAGAAACTCGCAATCCACGGCAACAGACAGTGAAACAAGGGTGTCTAACTCGATAAATAATGGAGCTGAAGCAGAATGTCCTGAGAAGCAGATGACTGATGGATCACGGAAGCAGGGCGAGAAAAAACGTAGCACATCCGAAAAAAACGTGAGCTTGAGTGTTCTACAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCAAAGAGCATTGGTGTTTGTCCAACAACGCTGAAAAGAATATGCAGACAACACGGGATTTTGAGGTGGCCGTCCCGTAAAATAAACAAGGTAAACCGTTCGTTAAGGAAAATACAGACGGTTCTTGATTCTGTGAAGGGGGTGGAGGGCGGCCTGAAGTTTGATCCAACTACAGGGTGTCTTATGGCTGGTTCTCTTATTCCAGAACTCAATGCACAAAATAGTCTTCTCTTCTCTGATAATAACCCAGCTATACCAAACCTTGACCCGTTCCTTCATGACGTAAATTCGGTTCCTTCTGCCCCTTTCAATACTCAGAATTCTGCCATCAAACTGGAAATGGACGAGTCTTCCGTTTCTATATCCCAAAGAACGTCATCGAGGAGTGTTCTCATTCCAGAGAAGGAACCGACCGTTCGCCATCGTGATTGTAGTGAAGGCTTGGAGGCCGCTGGTGTAGATGCTGCATCATGCCAGCTTGCTGATCTGGATATGGTGGGTTGGGATGTCCAAGGGAATGCCTCAGCTTCTATTGCTGCTAAAAAAAGTGACAGATTGGATTTTGTGAAGAACGATTTGAGGTCAGGAGATGCCGACTGCCAATTTATGGCCAAGAGCTCGATCTCTTTTGCAGCTGCTGATGAAGTCGGTACCGTGTTGAATGAACATTACCAGCCAACTACTTCGAGCATGACCGACTCATCAAATGGCTCTGGCTTAATGATTCATGGCAGTTCATCTAGCAGTCAGAGCGTCGAGAGGAAGCATTTGCCAGAAAAAGTTGGCTCGGTTGACAGCGAGTCCAAGATTATTGTAAAAGCTTCATACAAAGACGACACAGTTCGATTCAAGTTCGATCCTTGTTTAGGATATCTCCAGCTCTACGAAGAAGTAGGCACGCGATTCAAGCTAAACCAAGGAACATTTCAACTCAAATACCTAGACGATGAAAAAGAATGGGTGATGCTAGTAAGCAATTCAGACTTACAGGAATGTCTCGAGGTGATGGACGAAATCGGCACGAGAAATGTGAAGTTTCTCGTCCGTGATATCGCGTGTGCCGTGGGCAGTTCAGGTAGCAGTAGTTGCTTCCTATCTGGATGCATCCCTCCTACCCATTACCAGCGGCACCCCGAATCCTGCAGGTTGTTCCTGCCCGACGCTGTCTCAGCCGCCGCAGTCTGCACTCTCAGTCCTCCCGCTGCTATCTTCCTCTCCCTCTATTTCAGAAACTCAGTGGTTCAGCATTTTACCCGCGTCAGGGTTAATCTCTCACTATTCCAAGGAGGCTTTCATTTCGCCTTGGCTATGGGGAAGAAACGTAATAACGAGAAACATAAGGTAATTCTACCGCCGGACCTTCCACCAGAGGTTACCGAGGAAGAAATTGAGGTCTCCGATGAGGATTTGGAGTTTGTCAAGGAGAACCAGGACTATGCCGTCTCTGTTACTCGTCTAGACACTAAATCCATTACCAAGCATGTTACACGTGTTGCTAATGTTGAAGAAGATGCTTTGGAGGTTTTATACGAGAAGCGTCTGCGCAAGAAGCCACTGCCAAAACCGGAGGAGGAAAATAAGACCCAGGTTGATCGTGTGGATGCTCTTCCTGTCAAAACACTTGAGGGGGAACTTTACTACCGGACATCAAAAGCATCTGATGCACCTGAAGATGGTGGGAACGAAGAGGCAATGGAAGAGGACAGGGTAGATAATGGTGTATTGAAGTTAACTAAAGCAGAAAGGAGGGCAAAGCTGAAGAAAACTAAAAAGGTTGCCAAGAAACAAGAGGATGTAACCAAAGCTGAAGAAGTTAAACCAACCCCACAAGCAGCAGTTTTGGCGGAAGTGGTAGAAGATCTTACTGCTGAAAAGACATTTGAAAGTAAGAAGCAGAAACTTGCGGAGCTTGGAATTGCGTTGCTGGCAGACCCAAATTCCAATATTAAATCTCTGAAGGACATGCTACAGATTGTTAAGGATAATGATCAAGCAATTGTGAAACTTGGACTTCTATCATTATTGGCTGTTTTTAAAGACATTATACCTGGTTATCGGATTCGGCTTCCAACAGAAAAGGAGCTAGAAGTTAAAGTATCCAAGGATGTCAAGAAAATGCGGTACTATGAGTACACTCTTCTCACTACTTATAAGGGATACCTGCAGAAGCTGATGTCATTAGAGAAATCTACAGCATTTCAGCATATTGTTATTCGCTGTATCTGTACGTTGCTTGATGCAGTTCCCCACTTCAATTTTCGAGAGACATTGTTAGGCATTGTTGTTCAAAATATAAGCTCCCATGATGATGTTGTAAGAAAACTCTGTAGTGGTGCTATTAAGTCTTTATTTATCAATGAGGGAAAGCATGGTGGTGAGGCGACTGTGGAGGCTGTCCGGTTGATTGCTGATCATGTGAAATTTCATGACTGCCAATTGCATCCTGATTCCATCCAGCCTTTCATGCATCTAACATTTGACGAGGATCTGAGAAGAGCAGAAAAGCAAGATGAGCATAATAAAGTAAAGAACAAAAAACAATGGAAAAAAAAGAATCGTGAGGAAAAAAAGAATCGTGAGGAATCAAATCATTCGCAAGGGAATGATGGAAGACAAAGTACGAGGACAAAGTTTACTGAAGAGGTTGCTGCGGATTACAGGGCTGCTTCTCTTGCTCCAGATGTGATGAAGCAAAGAGAGATGCAGTCAGATACACTTCGTGCTGTATTTGAAACATATTTCCGAATCTTAAGGCATACAATGCAGTCATTAAAGGCTAGGCCTGAAGCAAATATTACTGCATCTACTACTAGCCCATCTGGATCCCATCCTCTGCTTGCTCCATGTTTGAATGGGTTGGGGAAATTTTCTCATCTGATCGATTTAGATTTCATGGGAGATCTTATGAATTATCTAAAAAGGCTTGCTTCTGGTGATGAGAAATCTTCTGAGAAACAGTCGCAATGTTTGACCGTTTCTGAGCGCCTTCAGTGTTGCATCGTGGCATTTAAAGTAATGAGGAAAAACCTTGATGCTTTGAATGTTGATCTTCAGGACTTTTTTGTCCAGCTGTACAATATTGTGCTCGAGTACAGGCCTGGAAGAGATCATGGTGGATTGTTAGCTGAAGCTTTGAAGATAATGTTGTGCGATGATAGACAGCATGACATGCAAAAGGCAGCTGCATTCATTAAGCGTTTGGCTACTTTCTCATTATGCTTTGGATCTGCAGAGTCGATGGCAGCCTTGGTCACCGTAAGGCATCTTCTTCTGAAAAATGTCAAGTGCCGCAACCTTTTGGAAAACGATGCTGGGGGAGGTTCAGTGTCTGGCTCAATAGCGAAATATCAACCATATGCTTCTGATCCAACATTGAGTGGCGCTCTTGCTTCTGTCCTTTGGGAACTTAATCTTCTGTGGAAGCATTATCATCCAACTATCTCAACGATGGCAGCGAGCATATCAAGCATGAATAATGCTCAAAACCAAGTTTATATCTCCACTGTTTCTCCCCAACAGGCATTCAAAGACTTGTCGCTGGAACAAGAGTCTTTCAACCCACAGTTTAATGTACGAAAAGTTAACAAGAAAAAAAGAGGCAGGGAATCATCCGAGCCTACTCCCGATACTTGCAGCGCCATCGACGAAAATGAAGTGAAAGAGAAACTTTCAACAAGATTCTTTCTTCTCCGGGACATCAAGGAGAATGAAAGACCTCCTTTGAGCGAGAGAGACTTTGATCTCTCCCTATTTCTGATGCAATTTCTCTGTTACTTCCATGGATTCCAAGCCTCCTCAGCCTTCAGAAGTTCGGTTTATTTTCAGTTTGCTGATTATGTGGCCATACTTTCTATTACTGCAGCTTCTAATCCTCCACCAAAACCTTGGGAACAAGTAGGGGGATCATCGGGTCCAGCACCGTTTAAACCCCCATCGGCTGGCAAAACAAGTGAGGTAGTTGAGGCTTCTGGGACTGCAAGACCTGGAGAAATCGTATCTGGTTCTGATAGGACTGCCACTGTTAATAGGAACTCACTTGGTAGGCCTGTTCCAACAAGACCTTGGGAGCAAAACTATGGGAATACCAGTTATGGAGGAGCATATGGTTCGACAATGAATAATTCACTTTATGGTTCTGGTATGTATGGTTCTTCGTCTTATGGCGGTGGAATGTATGGCGGTGGGATGTATGGGAACAGCATGTATAGAGGAGGTTATGGTGGAGGTTATGGATCTTCTGGTATGTATGGAGGTGGAATGTATAATAGTGGCTTTGGAGGTCCAATGGGTGGTTATGGAATGGGGATGGGTGGTCCTTATGGTGGTCAAGATCCAAATAACCCATATGGTCCTCCCTCATCTCCTCCAGGATTTTGGATGTCATTTCTGCGAGTGATGCACGGTGTTGTGAACTGCTTCGGTCGAATATCTGTTCTTATTGACCAAAACACACAGGCGTTCCATATGTTCATGTCTGCACTACTTCAGCTTTTCGATCGCTCGGGTATGTTATACGGAGAGCTTGCTAGATTTGTCTTAAGGCTGCTTGGGATTAAAACCAAACCTAGGAAAGTTGGACAAGTAGGCCCTGATGGGCTTCCTCTTCCTGGGGCACCCCATCCTCATCAAGGCCGGAACTTGCTCGAGGGACCACAGGCAGCTCCTGAAGGTTCATGGGATAATGTTTGGCCGAACGGTGGTCAGTAA 6501 44.47 MENPFSSKEEGMMGYWGPSRTQAETMNSTDAGMRILSPEDVLPTFSDMMNFDSYAAIDQIFTSCGFSSMPQMSTCGSIEGLSFVEGGCHEGFPLNEHGGASISMANSFTCGDKVMFQLPDTEFGVSSVSDNANKVDSKSNDVPVDMDSCLISRPFGWSLDEKMLRVLSMFKESSPGGILAQVWVPVKHGDQFFLSTSEQPYLLDQMLTGYREVSRSFRFSAEGKLGSLLGLPGRVFTSKLPEWTSNVRYYSDHEYLRMQHAIGHDVYGSIALPVFNNEVEKSCCAVLEVVTTKEKPNFDAEIDIVSQALETVSLSTVPPPRLYSQCLKKNQRAALAEIVDVLRAVCHAHRLPLALTWIPCCYSFDAVDEVARVRVKENNINPEEKFVLCIEETACYVNDKSTQGFVHACLEHHLEEGQGIAGKALQSNHPFFYPDVKAYDINKYPLVHHARKFGLNAAVAIRLRSMYTGNDDYILEFFLPVNMKGAAEQQLLLNNLSVTMQRMCRSLRTVSKEELIGAEDSVVDFQSGFTSMRNSQSTATDSETRVSNSINNGAEAECPEKQMTDGSRKQGEKKRSTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVLDSVKGVEGGLKFDPTTGCLMAGSLIPELNAQNSLLFSDNNPAIPNLDPFLHDVNSVPSAPFNTQNSAIKLEMDESSVSISQRTSSRSVLIPEKEPTVRHRDCSEGLEAAGVDAASCQLADLDMVGWDVQGNASASIAAKKSDRLDFVKNDLRSGDADCQFMAKSSISFAAADEVGTVLNEHYQPTTSSMTDSSNGSGLMIHGSSSSSQSVERKHLPEKVGSVDSESKIIVKASYKDDTVRFKFDPCLGYLQLYEEVGTRFKLNQGTFQLKYLDDEKEWVMLVSNSDLQECLEVMDEIGTRNVKFLVRDIACAVGSSGSSSCFLSGCIPPTHYQRHPESCRLFLPDAVSAAAVCTLSPPAAIFLSLYFRNSVVQHFTRVRVNLSLFQGGFHFALAMGKKRNNEKHKVILPPDLPPEVTEEEIEVSDEDLEFVKENQDYAVSVTRLDTKSITKHVTRVANVEEDALEVLYEKRLRKKPLPKPEEENKTQVDRVDALPVKTLEGELYYRTSKASDAPEDGGNEEAMEEDRVDNGVLKLTKAERRAKLKKTKKVAKKQEDVTKAEEVKPTPQAAVLAEVVEDLTAEKTFESKKQKLAELGIALLADPNSNIKSLKDMLQIVKDNDQAIVKLGLLSLLAVFKDIIPGYRIRLPTEKELEVKVSKDVKKMRYYEYTLLTTYKGYLQKLMSLEKSTAFQHIVIRCICTLLDAVPHFNFRETLLGIVVQNISSHDDVVRKLCSGAIKSLFINEGKHGGEATVEAVRLIADHVKFHDCQLHPDSIQPFMHLTFDEDLRRAEKQDEHNKVKNKKQWKKKNREEKKNREESNHSQGNDGRQSTRTKFTEEVAADYRAASLAPDVMKQREMQSDTLRAVFETYFRILRHTMQSLKARPEANITASTTSPSGSHPLLAPCLNGLGKFSHLIDLDFMGDLMNYLKRLASGDEKSSEKQSQCLTVSERLQCCIVAFKVMRKNLDALNVDLQDFFVQLYNIVLEYRPGRDHGGLLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTVRHLLLKNVKCRNLLENDAGGGSVSGSIAKYQPYASDPTLSGALASVLWELNLLWKHYHPTISTMAASISSMNNAQNQVYISTVSPQQAFKDLSLEQESFNPQFNVRKVNKKKRGRESSEPTPDTCSAIDENEVKEKLSTRFFLLRDIKENERPPLSERDFDLSLFLMQFLCYFHGFQASSAFRSSVYFQFADYVAILSITAASNPPPKPWEQVGGSSGPAPFKPPSAGKTSEVVEASGTARPGEIVSGSDRTATVNRNSLGRPVPTRPWEQNYGNTSYGGAYGSTMNNSLYGSGMYGSSSYGGGMYGGGMYGNSMYRGGYGGGYGSSGMYGGGMYNSGFGGPMGGYGMGMGGPYGGQDPNNPYGPPSSPPGFWMSFLRVMHGVVNCFGRISVLIDQNTQAFHMFMSALLQLFDRSGMLYGELARFVLRLLGIKTKPRKVGQVGPDGLPLPGAPHPHQGRNLLEGPQAAPEGSWDNVWPNGGQ 2166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10250361 10267098 - Carg15433-RA Car06g01442 151178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01442 2166 MobiDBLite consensus disorder prediction 1431 1474 - -
Car06g01442 2166 MobiDBLite consensus disorder prediction 1889 1914 - -
Car06g01442 2166 Pfam RWP-RK domain 581 629 IPR003035 -
Car06g01442 2166 Pfam PB1 domain 870 947 IPR000270 GO:0005515
Car06g01442 2166 ProSiteProfiles RWP-RK domain profile. 568 649 IPR003035 -
Car06g01442 2166 Pfam Nucleolar complex-associated protein 1228 1318 IPR011501 -
Car06g01442 2166 MobiDBLite consensus disorder prediction 2122 2166 - -
Car06g01442 2166 Pfam CBF/Mak21 family 1594 1749 IPR005612 -
Car06g01442 2166 MobiDBLite consensus disorder prediction 532 555 - -
Car06g01442 2166 MobiDBLite consensus disorder prediction 825 850 - -
Car06g01442 2166 MobiDBLite consensus disorder prediction 532 580 - -
Car06g01442 2166 ProSiteProfiles PB1 domain profile. 867 949 IPR000270 GO:0005515
Car06g01442 2166 MobiDBLite consensus disorder prediction 561 579 - -
Car06g01442 2166 MobiDBLite consensus disorder prediction 825 851 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01442 Car-Chr6:10250361 Car19g00869 Car-Chr19:9039579 1.01E-26 dispersed
Car18g01240 Car-Chr18:11849431 Car06g01442 Car-Chr6:10250361 1.68E-08 dispersed
Car14g01252 Car-Chr14:10795346 Car06g01442 Car-Chr6:10250361 1.31E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3768 PF03914 CBF 3.20E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01442 - K14834 csv:101222520 1542.71