Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01472 ATGTACCACCACCACCATCATCAGCAGCAGCAGCAGCAGCATCATCAGCATAATAGAGGGAAGAGCATCCATTCCTCTGACACCCATTTGTTTCTTCAACCTGGGAATGCAGCTGCTGGAGCTGGAGATTCATCAGGCCTTGTTCTGTCCACCGATGCCAAGCCCAGGCTTAAATGGACTCCTGACTTGCACGATCGCTTTGTTGAAGCTGTCAACCAGCTTGGAGGGGCTGACAAGGCCACTCCTAAAACTGTCATGAAAATCATGGGCATTCCTGGGCTTACCTTGTACCACTTGAAAAGCCATCTCCAGAAATACAGGCTGAGTAAGAATGTACATGGACAAGCAAATGGTGGAGGAAATGGAAGCAACAAAACTGGGACAGTGGCGGCTGTTTACGGCGATCAAAGACTGGCGGCGGAGGCAAATGGAACAGCCCGCACCAACAACATAGTGGTCGCCCCACAGCCCTCCTCCCACCCCAACAAAAGCCTTCAGATCAGTGAAACAATACAGATGCAGATTGAAGTCCAGAAAAGGCTGCACGAGCAGCTCGAGGTACAACGGCACTTGCAGCTGCGAATAGAAGCACAAGGGAAGTATCTTCAAACAGTGCTGGAGAAAGCACAAGAGACACTAGGAAGGCAGGACTTGGGGTCAGTGGGTCTTGAAGCTGCAAAAGTGCAGCTCTCGGAGTTGGTCTCCAAGGTCTCCACTCAATGCCTAACCGCAGCGTTTCCAGAGCTCCAACAAACTCAGAGGCTATGTCCTCAACAAACGCAGCCCCCTGACTGCTCCATGGACAGTTGCCTGACCTCCTGCGAGGCCTCCAAGGACCAACAACAACAACAACAACTCCTCCATAACTCCCAACACGCCCTCCGACCGAAAGCCATCGCCACCGACCATCATGGGCTGTCCATGAGCATTGGGCTGCTGCAGGGGGACAAGGGCGGGGAAGGGGATAATGGGTATTCGCCCTCGTTTGGGAGTAAGAAAAAGGAGGGTGAGGCGGCGTTTAGATATAGAATGGCAGCTTCGTTTTTGGACTTGAATGCTGGTGAGGATCAACAACTTGGTAATAATGATCATGCGGCTTCTGCTACTTGCAAGATGTTTGACCTCAATGGCTTTAGTTGA 1140 51.67 MYHHHHHQQQQQQHHQHNRGKSIHSSDTHLFLQPGNAAAGAGDSSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNVHGQANGGGNGSNKTGTVAAVYGDQRLAAEANGTARTNNIVVAPQPSSHPNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQDLGSVGLEAAKVQLSELVSKVSTQCLTAAFPELQQTQRLCPQQTQPPDCSMDSCLTSCEASKDQQQQQQLLHNSQHALRPKAIATDHHGLSMSIGLLQGDKGGEGDNGYSPSFGSKKKEGEAAFRYRMAASFLDLNAGEDQQLGNNDHAASATCKMFDLNGFS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10422974 10426829 - Carg23336-RA Car06g01472 151208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01472 379 Pfam Myb-like DNA-binding domain 56 107 IPR001005 -
Car06g01472 379 MobiDBLite consensus disorder prediction 1 19 - -
Car06g01472 379 MobiDBLite consensus disorder prediction 1 27 - -
Car06g01472 379 Pfam MYB-CC type transfactor, LHEQLE motif 165 212 IPR025756 -
Car06g01472 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 111 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01067 Car-Chr6:8029913 Car06g01472 Car-Chr6:10422974 1.09E-28 dispersed
Car06g01472 Car-Chr6:10422974 Car14g01006 Car-Chr14:8203681 0 dispersed
Car06g01472 Car-Chr6:10422974 Car14g01696 Car-Chr14:13483448 1.10E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3770 PF00249 Myb_DNA-binding 5.40E-08 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01472 - - csv:101206445 498.819