Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01490 ATGGCTGGAGAAACTCCCGATGGAAACTCCGGCAATCCGCCGTCGGAGCTCGATTCCCCCACCACCTCTGCTGGTTTCGAAACCGACCAGCTTCCTCATCTCAGTCACATTTCCGACAACTACCCCGACGAGGACGAAGCTGCCGTTGATCCTCACATCGTTCACGACGAGCCTGATCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAATTTCCTGGACGATTATCGGAGGATGGACGACCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCTGAGATGGAACTCGAGACTCGTGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACACGACCATGACTCTGAGGATGACAATTACAGGCCTTCGAAAAGATCAAGAGCCGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTACGATGACATTGATGGCATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAGCATGTTACTATGGATGCAGTTCGGCGCTTTATAGGCAAAAAGTTTAAGAAATTCTTGGAAACATATGTGAATCCTAAGAGTGGAAATGGAGAGCTCGAGTACATGCGACTGATAAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAATCCGTCTTAGAAGTTATGGAAGACGTTGCAAAGAAGGTTGTGTTTGACATACATCCGAACTACAAAAACATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTTTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGTGGCGTAGTGACTCGGCGCTCTGGTGTGTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTCTTTCAGAATTCTTACTCGGAGGTCAAGGTTGGTTCTTGTCCCGAATGCCAGTCGAAGGGGCCATTTACAGTAAATGTCGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTCCCAAGGTATAAGGAAGTGATACTCTTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAGGAAATTGAAGTCACTGGCATTTATACAAATAATTTTGACTTATCGTTGAATACAAAGAATGGTTTTCCTGTGTTCTCCACGGTTGTTGAAGCAAATTATGTTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAATCCATTGCCCCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACTGCCAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGTGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTGATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATACATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCTGGAATTGTCACTTCTCTTCAAGCCAGATGCTCTGTCATTGCAGCTGCCAATCCCGTTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTGGAGCTGACAGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGATGCTTGCTAAGTTTGTTGTTGATAGTCATTTCAAATCACAGCCGAAGGGCGGTAATATTGATGATAAGTCTGTAAATGAATCTCAAGAGGACAGTCAAGACTCTACAAGGCCACTGGATCCGGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACATGTCTACGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGGTATTAAAGGAGATCACTATTTTCTCTCTCTAG 2589 43.76 MAGETPDGNSGNPPSELDSPTTSAGFETDQLPHLSHISDNYPDEDEAAVDPHIVHDEPDPDEEEEGEDLYHDNFLDDYRRMDDHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQSVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGGNIDDKSVNESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKVLKEITIFSL 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10509629 10514229 - Carg23318-RA Car06g01490 151226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01490 862 CDD AAA 552 693 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 72 93 - -
Car06g01490 862 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g01490 862 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Car06g01490 862 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g01490 862 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Car06g01490 862 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car06g01490 862 MobiDBLite consensus disorder prediction 57 71 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 38 56 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 1 203 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 723 748 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 730 744 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 8 35 - -
Car06g01490 862 Pfam MCM OB domain 327 454 IPR033762 -
Car06g01490 862 Pfam MCM N-terminal domain 228 321 IPR027925 -
Car06g01490 862 MobiDBLite consensus disorder prediction 175 190 - -
Car06g01490 862 MobiDBLite consensus disorder prediction 102 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00301 Car-Chr6:1678624 Car06g01490 Car-Chr6:10509629 1.41E-91 dispersed
Car06g01490 Car-Chr6:10509629 Car17g00984 Car-Chr17:7900030 7.33E-104 dispersed
Car12g01142 Car-Chr12:11075178 Car06g01490 Car-Chr6:10509629 2.29E-107 transposed
Car19g00342 Car-Chr19:5283540 Car06g01490 Car-Chr6:10509629 1.41E-78 transposed
Car14g00959 Car-Chr14:5910123 Car06g01490 Car-Chr6:10509629 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01490 K02540 - csv:101219546 1588.16