Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00054 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATTAATGGACTAAATCAACCCAGCATCACAGCCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTATAGAAGCATCTTTTCTCCATATGATGCTCAACCGTATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGGTGATAAATCACATCCCAATATAAATCTTAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 618 42.23 MTSSVHDYSDNGEADKLQKYSESQNHSSSVINGLNQPSITASNQYLTPLQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSHPNINLNSDRSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 347042 349995 + Carg14966-RA Car07g00054 151288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00054 205 MobiDBLite consensus disorder prediction 1 35 - -
Car07g00054 205 MobiDBLite consensus disorder prediction 21 35 - -
Car07g00054 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Car07g00054 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Car07g00054 205 MobiDBLite consensus disorder prediction 170 205 - -
Car07g00054 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Car07g00054 205 MobiDBLite consensus disorder prediction 163 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00054 Car-Chr7:347042 Car10g00841 Car-Chr10:4806683 5.62E-39 dispersed
Car03g01306 Car-Chr3:9982414 Car07g00054 Car-Chr7:347042 1.25E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3780 PF02045 CBFB_NFYA 4.20E-26 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00054 K08064 - csv:101205549 343.584